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2BRP
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S.PNEUMONIAE HYALURONATE LYASE IN COMPLEX WITH W249B
Authors
:
D. J. Rigden, M. J. Jedrzejas
Date
:
10 May 05 (Deposition) - 24 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
(Alfa5/Alfa5) Barrel, Lyase, Peptidoglycan-Anchor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Rigden, A. Botzki, M. Nukui, R. B. Mewbourne, E. Lamani, S. Braun, E. Von Angerer, G. Bernhardt, S. Dove, A. Buschauer, M. J. Jedrzejas
Design Of New Benzoxazole-2-Thione-Derived Inhibitors Of Streptococcus Pneumoniae Hyaluronan Lyase: Structure Of A Complex With A 2- Phenylindole.
Glycobiology V. 16 757 2006
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: SULFAMIC ACID 1-DECYL-2-(4-SULFAMO... (SIEa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
3a: D-XYLOSE (LINEAR FORM) (XLSa)
3b: D-XYLOSE (LINEAR FORM) (XLSb)
3c: D-XYLOSE (LINEAR FORM) (XLSc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SIE
1
Ligand/Ion
SULFAMIC ACID 1-DECYL-2-(4-SULFAMOYLOXYPHENYL)-1H-INDOL-6-YL ESTER
2
SO4
5
Ligand/Ion
SULFATE ION
3
XLS
3
Ligand/Ion
D-XYLOSE (LINEAR FORM)
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:401 , LYS A:560 , VAL A:635 , ASP A:675 , MET A:809 , GLU A:812 , LYS A:831 , HOH A:2306 , HOH A:2543 , HOH A:2544 , HOH A:2545
BINDING SITE FOR RESIDUE XLS A1100
2
AC2
SOFTWARE
THR A:400 , ASN A:401 , LYS A:549 , ARG A:572 , THR A:573 , GLN A:878 , HOH A:2484 , HOH A:2546 , HOH A:2547 , HOH A:2548
BINDING SITE FOR RESIDUE XLS A1101
3
AC3
SOFTWARE
SER A:314 , GLU A:867 , TYR A:868 , ASP A:883 , HOH A:2535 , HOH A:2549 , HOH A:2550 , HOH A:2551 , HOH A:2552 , HOH A:2553
BINDING SITE FOR RESIDUE XLS A1102
4
AC4
SOFTWARE
HIS A:578 , LYS A:581 , LYS A:584 , SER A:630 , HOH A:2554 , HOH A:2555
BINDING SITE FOR RESIDUE SO4 A1200
5
AC5
SOFTWARE
ALA A:628 , ASP A:629 , SER A:630 , HOH A:2374 , HOH A:2556
BINDING SITE FOR RESIDUE SO4 A1201
6
AC6
SOFTWARE
GLN A:729 , LYS A:748 , LYS A:749 , HOH A:2446
BINDING SITE FOR RESIDUE SO4 A1202
7
AC7
SOFTWARE
HIS A:334 , LYS A:344 , LYS A:811 , HOH A:2557 , HOH A:2558
BINDING SITE FOR RESIDUE SO4 A1203
8
AC8
SOFTWARE
ARG A:267 , LYS A:444 , LYS A:645 , HOH A:2559 , HOH A:2560
BINDING SITE FOR RESIDUE SO4 A1204
9
AC9
SOFTWARE
GLY A:289 , ASN A:290 , TRP A:291 , TRP A:292 , ARG A:336 , GLU A:388 , ASP A:398 , HIS A:399 , TYR A:408 , VAL A:411 , ARG A:462 , ARG A:466 , ASN A:580 , HOH A:2088 , HOH A:2134 , HOH A:2214 , HOH A:2541 , HOH A:2542
BINDING SITE FOR RESIDUE SIE A1000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2brpa1 (A:170-540)
2a: SCOP_d2brpa2 (A:815-890)
3a: SCOP_d2brpa3 (A:541-814)
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Classes
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Chondroitin AC/alginate lyase
(45)
Family
:
Hyaluronate lyase-like catalytic, N-terminal domain
(40)
Protein domain
:
Hyaluronate lyase
(21)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(18)
1a
d2brpa1
A:170-540
Class
:
All beta proteins
(24004)
Fold
:
Hyaluronate lyase-like, C-terminal domain
(40)
Superfamily
:
Hyaluronate lyase-like, C-terminal domain
(40)
Family
:
Hyaluronate lyase-like, C-terminal domain
(35)
Protein domain
:
Hyaluronate lyase
(21)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(18)
2a
d2brpa2
A:815-890
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Hyaluronate lyase-like, central domain
(35)
Protein domain
:
Hyaluronate lyase
(21)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(18)
3a
d2brpa3
A:541-814
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2brpA01 (A:170-542)
2a: CATH_2brpA02 (A:548-804)
3a: CATH_2brpA03 (A:805-890)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.100, no name defined]
(43)
Streptococcus pneumoniae. Organism_taxid: 1313.
(17)
1a
2brpA01
A:170-542
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Streptococcus pneumoniae. Organism_taxid: 1313.
(17)
2a
2brpA02
A:548-804
Architecture
:
Sandwich
(5577)
Topology
:
Chondroitinase Ac; Chain A, domain 3
(40)
Homologous Superfamily
:
Chondroitinase Ac; Chain A, domain 3
(40)
Streptococcus pneumoniae. Organism_taxid: 1313.
(17)
3a
2brpA03
A:805-890
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (138 KB)
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Header - Biol.Unit 1
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