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2BQ4
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TYPE I CYTOCHROME C3 FROM DESULFOVIBRIO AFRICANUS
Authors
:
M. Czjzek, L. Pieulle, X. Morelli, F. Guerlesquin, E. C. Hatchikian
Date
:
27 Apr 05 (Deposition) - 19 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Basic Cytochrome C3, Electron Transfer, Sulfate Reducing Bacteria, Sad, Heme, Iron, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Pieulle, X. Morelli, P. Gallice, E. Lojou, P. Barbier, M. Czjzek, P. Bianco, F. Guerlesquin, E. C. Hatchikian
The Type I / Type Ii Cytochrome C(3) Complex: An Electron Transfer Link In The Hydrogen-Sulfate Reduction Pathway.
J. Mol. Biol. V. 354 73 2005
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
2d: HEME C (HECd)
2e: HEME C (HECe)
2f: HEME C (HECf)
2g: HEME C (HECg)
2h: HEME C (HECh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
HEC
8
Ligand/Ion
HEME C
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:10 , LEU A:12 , GLU A:20 , TYR A:21 , HEC A:1118
BINDING SITE FOR RESIDUE CA A1119
02
AC2
SOFTWARE
ASP B:10 , LEU B:12 , GLU B:20 , TYR B:21 , HEC B:1119
BINDING SITE FOR RESIDUE CA B1120
03
AC3
SOFTWARE
PRO A:1 , GLN A:2 , VAL A:3 , PRO A:4 , HIS A:11 , PHE A:25 , HIS A:27 , HIS A:30 , ALA A:39 , CYS A:40 , CYS A:43 , HIS A:44 , GLY A:54 , HEC A:1117 , HOH A:2130
BINDING SITE FOR RESIDUE HEC A1115
04
AC4
SOFTWARE
CYS A:43 , HIS A:44 , HIS A:45 , LYS A:46 , CYS A:56 , GLU A:59 , GLY A:60 , CYS A:61 , HIS A:62 , ALA A:81 , SER A:84 , SER A:86 , MET A:88 , SER A:89 , HOH A:2131 , HOH A:2132 , HOH A:2133 , LYS B:28
BINDING SITE FOR RESIDUE HEC A1116
05
AC5
SOFTWARE
PHE A:25 , ALA A:29 , HIS A:30 , SER A:32 , LEU A:33 , THR A:35 , CYS A:43 , PRO A:87 , MET A:88 , SER A:89 , CYS A:90 , CYS A:93 , HIS A:94 , MET A:97 , THR A:103 , THR A:104 , GLY A:105 , PRO A:106 , HEC A:1115 , HOH A:2134
BINDING SITE FOR RESIDUE HEC A1117
06
AC6
SOFTWARE
ILE A:9 , ASP A:10 , HIS A:11 , LEU A:12 , SER A:13 , ASN A:14 , LEU A:19 , GLU A:20 , TYR A:21 , VAL A:23 , PHE A:68 , ALA A:70 , MET A:79 , PHE A:82 , HIS A:83 , CYS A:90 , GLN A:91 , HIS A:94 , PRO A:106 , THR A:107 , CYS A:109 , CYS A:112 , HIS A:113 , CA A:1119
BINDING SITE FOR RESIDUE HEC A1118
07
AC7
SOFTWARE
GLN B:2 , HIS B:11 , PHE B:25 , HIS B:27 , HIS B:30 , ALA B:39 , CYS B:40 , CYS B:43 , HIS B:44 , ILE B:53 , GLY B:54 , GLY B:55 , HEC B:1118 , HOH B:2010 , HOH B:2081 , HOH B:2141 , HOH B:2142 , HOH B:2143 , HOH B:2144 , HOH B:2145
BINDING SITE FOR RESIDUE HEC B1116
08
AC8
SOFTWARE
LYS A:28 , CYS B:43 , HIS B:45 , LYS B:46 , GLY B:55 , CYS B:56 , GLU B:59 , GLY B:60 , CYS B:61 , HIS B:62 , PRO B:75 , ALA B:81 , SER B:84 , SER B:86 , MET B:88 , SER B:89 , HOH B:2146 , HOH B:2147
BINDING SITE FOR RESIDUE HEC B1117
09
AC9
SOFTWARE
PHE B:25 , ALA B:29 , HIS B:30 , SER B:32 , LEU B:33 , THR B:35 , CYS B:43 , PRO B:87 , SER B:89 , CYS B:90 , CYS B:93 , HIS B:94 , MET B:97 , THR B:103 , THR B:104 , GLY B:105 , PRO B:106 , GLN B:115 , HEC B:1116 , HOH B:2148 , HOH B:2149
BINDING SITE FOR RESIDUE HEC B1118
10
BC1
SOFTWARE
ILE B:9 , ASP B:10 , HIS B:11 , LEU B:12 , SER B:13 , ASN B:14 , LEU B:19 , GLU B:20 , TYR B:21 , VAL B:23 , PHE B:68 , ALA B:70 , MET B:79 , PHE B:82 , HIS B:83 , CYS B:90 , GLN B:91 , HIS B:94 , PRO B:106 , THR B:107 , CYS B:109 , CYS B:112 , HIS B:113 , CA B:1120
BINDING SITE FOR RESIDUE HEC B1119
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:35-99,B:35-99)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYC3B_DESAF
59-123
2
A:35-99
B:35-99
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bq4a_ (A:)
1b: SCOP_d2bq4b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Desulfovibrio africanus [TaxId: 873]
(1)
1a
d2bq4a_
A:
1b
d2bq4b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2bq4A00 (A:1-114)
1b: CATH_2bq4B00 (B:1-115)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Desulfovibrio africanus. Organism_taxid: 873
(1)
1a
2bq4A00
A:1-114
1b
2bq4B00
B:1-115
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (58 KB)
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