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2BPO
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE YEAST CPR TRIPLE MUTANT: D74G, Y75F, K78A.
Authors
:
L. V. Yermalitskaya, Y. Kim, M. R. Waterman, L. M. Podust
Date
:
21 Apr 05 (Deposition) - 13 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Reductase, Nadph-Cytochrome P450 Reductase, Cpr, Diflavin Reductase, Fad, Fmn-Binding, Nadp, Electron Transfer
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. V. Yermalitskaya, Y. Kim, M. R. Waterman, L. M. Podust
Crystal Structure Of The Yeast Cpr Triple Mutant: D74G, Y75F, K78A.
To Be Published
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:282 , ASP A:284 , ARG A:285 , ASN A:582
BINDING SITE FOR RESIDUE SO4 A 760
2
AC2
SOFTWARE
ASP A:626 , PRO B:337
BINDING SITE FOR RESIDUE SO4 A 761
3
AC3
SOFTWARE
ARG B:553
BINDING SITE FOR RESIDUE SO4 B 762
4
AC4
SOFTWARE
HIS A:306 , GLY A:364 , PRO A:365 , TYR A:405 , PHE A:406 , ASN A:407 , ARG A:439 , TYR A:440 , TYR A:441 , SER A:442 , THR A:457 , SER A:458 , ILE A:459 , GLU A:461 , PHE A:463 , VAL A:474 , VAL A:475 , GLY A:476 , VAL A:477 , THR A:478 , THR A:479 , TRP A:691 , FMN A:751 , NAP A:753 , HOH A:2073 , HOH A:2075 , HOH A:2123 , HOH A:2124
BINDING SITE FOR RESIDUE FAD A 750
5
AC5
SOFTWARE
SER A:67 , GLN A:68 , THR A:69 , GLY A:70 , THR A:71 , ALA A:72 , SER A:116 , THR A:117 , TYR A:118 , GLY A:119 , LEU A:152 , GLY A:153 , ASN A:154 , TYR A:157 , GLU A:158 , PHE A:159 , PHE A:160 , ASN A:161 , ASP A:187 , VAL A:690 , FAD A:750 , HOH A:2126 , HOH A:2127
BINDING SITE FOR RESIDUE FMN A 751
6
AC6
SOFTWARE
ARG A:285 , ILE A:459 , GLU A:461 , PRO A:541 , GLY A:542 , THR A:543 , SER A:580 , ARG A:581 , SER A:610 , ARG A:611 , LYS A:617 , TYR A:619 , GLN A:621 , ASP A:646 , ALA A:647 , LYS A:648 , GLY A:649 , MET A:650 , FAD A:750 , HOH A:2096 , HOH A:2101 , HOH A:2113
BINDING SITE FOR RESIDUE NAP A 753
7
AC7
SOFTWARE
HIS B:306 , GLY B:364 , PRO B:365 , TYR B:405 , PHE B:406 , ASN B:407 , ARG B:439 , TYR B:440 , TYR B:441 , SER B:442 , THR B:457 , SER B:458 , ILE B:459 , GLU B:461 , VAL B:474 , VAL B:475 , GLY B:476 , VAL B:477 , THR B:478 , THR B:479 , ARG B:522 , TRP B:691 , HOH B:2038
BINDING SITE FOR RESIDUE FAD B 750
8
AC8
SOFTWARE
SER B:67 , GLN B:68 , THR B:69 , GLY B:70 , THR B:71 , ALA B:72 , SER B:116 , THR B:117 , TYR B:118 , GLY B:119 , LEU B:152 , GLY B:153 , ASN B:154 , TYR B:157 , PHE B:159 , PHE B:160 , ASN B:161 , ASP B:187 , VAL B:690
BINDING SITE FOR RESIDUE FMN B 751
9
AC9
SOFTWARE
ARG B:285 , ILE B:459 , GLU B:461 , GLY B:542 , THR B:543 , SER B:580 , ARG B:581 , SER B:610 , ARG B:611 , LYS B:617 , TYR B:619 , GLN B:621 , ASP B:646 , ALA B:647 , LYS B:648 , GLY B:649 , MET B:650 , TRP B:691 , HOH B:2057 , HOH B:2058
BINDING SITE FOR RESIDUE NAP B 753
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_NCPR_YEAST_001 (V474G, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NCPR_YEAST_001
*
V
474
G
NCPR_YEAST
---
---
A/B
V
474
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (A:61-204,B:61-204)
2: FAD_FR (A:266-529,B:266-529)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NCPR_YEAST
61-204
2
A:61-204
B:61-204
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NCPR_YEAST
266-529
2
A:266-529
B:266-529
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:47-691 (gaps) | B:47-691 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YHR042W
1
YHR042W.1
VIII:190536-192611
2076
NCPR_YEAST
1-691
691
2
A:47-691 (gaps)
B:47-691 (gaps)
645
645
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2bpoA04 (A:526-691)
1b: CATH_2bpoB04 (B:526-691)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Baker's yeast (Saccharomyces cerevisiae)
(3)
1a
2bpoA04
A:526-691
1b
2bpoB04
B:526-691
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (222 KB)
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