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2BP5
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH NON-CANONICAL INTERNALIZATION PEPTIDE VEDYEQGLSG
Authors
:
S. J. Royle, P. R. Evans, D. J. Owen, R. D. Murrell-Lagnado
Date
:
18 Apr 05 (Deposition) - 06 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : M,P
Biol. Unit 1: M,P (1x)
Keywords
:
3D-Structure, Adaptor, Coated Pits, Endocytosis, Endocytosis-Exocytosis, Endocytosis/Exocytosis, Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Royle, O. S. Qureshi, L. K. Bobanovic, P. R. Evans, D. J. Owen, R. D. Murrell-Lagnado
Non-Canonical Yxxg-Phi Endocytic Motifs: Recognition By Ap2 And Preferential Utilization In P2X4 Receptors.
J. Cell. Sci V. 118 3073 2005
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: CLAT_ADAPTOR_M_1 (M:159-179)
2: MHD (M:170-434)
3: CLAT_ADAPTOR_M_2 (M:263-277)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLAT_ADAPTOR_M_1
PS00990
Clathrin adaptor complexes medium chain signature 1.
AP2M1_RAT
159-179
1
M:159-179
2
MHD
PS51072
Mu homology domain (MHD) profile.
AP2M1_RAT
170-434
1
M:170-434
3
CLAT_ADAPTOR_M_2
PS00991
Clathrin adaptor complexes medium chain signature 2.
AP2M1_RAT
263-277
1
M:263-277
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Exons
(2, 2)
Info
All Exons
Exon 1.11 (P:0-5)
Exon 1.12 (P:6-9)
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All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001752
1
ENSRNOE00000319078
chr12:
34961492-34961318
175
P2RX4_RAT
1-45
45
0
-
-
1.2
ENSRNOT00000001752
2
ENSRNOE00000012169
chr12:
34955928-34955781
148
P2RX4_RAT
45-94
50
0
-
-
1.3
ENSRNOT00000001752
3
ENSRNOE00000012174
chr12:
34953271-34953200
72
P2RX4_RAT
95-118
24
0
-
-
1.4
ENSRNOT00000001752
4
ENSRNOE00000012179
chr12:
34953093-34953021
73
P2RX4_RAT
119-143
25
0
-
-
1.5
ENSRNOT00000001752
5
ENSRNOE00000012181
chr12:
34952551-34952455
97
P2RX4_RAT
143-175
33
0
-
-
1.6
ENSRNOT00000001752
6
ENSRNOE00000012218
chr12:
34948092-34948012
81
P2RX4_RAT
175-202
28
0
-
-
1.7
ENSRNOT00000001752
7
ENSRNOE00000012192
chr12:
34947901-34947760
142
P2RX4_RAT
202-249
48
0
-
-
1.8
ENSRNOT00000001752
8
ENSRNOE00000012201
chr12:
34947665-34947529
137
P2RX4_RAT
250-295
46
0
-
-
1.9
ENSRNOT00000001752
9
ENSRNOE00000012211
chr12:
34945832-34945739
94
P2RX4_RAT
295-326
32
0
-
-
1.10
ENSRNOT00000001752
10
ENSRNOE00000012215
chr12:
34945649-34945584
66
P2RX4_RAT
327-348
22
0
-
-
1.11
ENSRNOT00000001752
11
ENSRNOE00000012231
chr12:
34945190-34945095
96
P2RX4_RAT
349-380
32
1
P:0-5
6
1.12
ENSRNOT00000001752
12
ENSRNOE00000356855
chr12:
34944632-34943903
730
P2RX4_RAT
381-388
8
1
P:6-9
4
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2bp5m1 (M:159-435)
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Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
(10)
Family
:
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
(7)
Protein domain
:
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
(7)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d2bp5m1
M:159-435
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2bp5M01 (M:159-284,M:392-430)
1b: CATH_2bp5M02 (M:285-391,M:431-435)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1170, no name defined]
(11)
Rat (Rattus norvegicus)
(3)
1a
2bp5M01
M:159-284,M:392-430
1b
2bp5M02
M:285-391,M:431-435
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Pfam Domains
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Asymmetric Unit 1
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