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2BOV
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
MOLECULAR RECOGNITION OF AN ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 EXOENZYME BY RALA GTPASE
Authors
:
K. P. Holbourn, J. M. Sutton, H. R. Evans, C. C. Shone, K. R. Acharya
Date
:
14 Apr 05 (Deposition) - 15 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.66
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
C3Bot, Exoenzyme, Rala, Gtpase, Adp, Ribosylating Toxin, Gtp-Binding, Lipoprotein, Prenylation, Glycosyltransferase, Nad, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. P. Holbourn, J. M. Sutton, H. R. Evans, C. C. Shone, K. R. Acharya
Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase
Proc. Natl. Acad. Sci. Usa V. 102 5357 2005
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: MAGNESIUM ION (MGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:28 , GDP A:1184 , HOH A:2029 , HOH A:2038 , HOH A:2056
BINDING SITE FOR RESIDUE MG A1185
2
AC2
SOFTWARE
GLY A:24 , VAL A:25 , GLY A:26 , LYS A:27 , SER A:28 , ALA A:29 , PHE A:39 , GLU A:41 , ASP A:42 , ASN A:127 , LYS A:128 , ASP A:130 , LEU A:131 , SER A:157 , ALA A:158 , LYS A:159 , MG A:1185 , HOH A:2029 , HOH A:2128 , HOH A:2129 , HOH A:2130 , HOH A:2131
BINDING SITE FOR RESIDUE GDP A1184
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.3a (A:11-38)
Exon 1.4b (A:39-108)
Exon 1.5 (A:108-166)
Exon 1.8d (A:167-184)
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All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4b
3: Boundary 1.4b/1.5
4: Boundary 1.5/1.8d
5: Boundary 1.8d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000005257
1a
ENSE00001829077
chr7:
39663082-39663424
343
RALA_HUMAN
-
0
0
-
-
1.3a
ENST00000005257
3a
ENSE00000832451
chr7:
39726230-39726380
151
RALA_HUMAN
1-38
38
1
A:11-38
28
1.4b
ENST00000005257
4b
ENSE00000679279
chr7:
39729981-39730189
209
RALA_HUMAN
39-108
70
1
A:39-108
70
1.5
ENST00000005257
5
ENSE00000679282
chr7:
39736284-39736458
175
RALA_HUMAN
108-166
59
1
A:108-166
59
1.8d
ENST00000005257
8d
ENSE00001270055
chr7:
39745722-39747723
2002
RALA_HUMAN
167-206
40
1
A:167-184
18
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2bovb_ (B:)
2a: SCOP_d2bova_ (A:)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
automated matches
(21)
Clostridium botulinum [TaxId: 1491]
(9)
1a
d2bovb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
2a
d2bova_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2bovA00 (A:11-184)
2a: CATH_2bovB00 (B:1044-1251)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2bovA00
A:11-184
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Homologous Superfamily
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Human (Homo sapiens)
(3)
2a
2bovB00
B:1044-1251
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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