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2BOS
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
A MUTANT SHIGA-LIKE TOXIN IIE BOUND TO ITS RECEPTOR
Authors
:
H. Ling, A. Boodhoo, G. D. Armstrong, C. G. Clark, J. L. Brunton, R. J. Read
Date
:
20 Oct 98 (Deposition) - 20 Oct 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Toxin, Receptor Binding, Protein-Carbohydrate Recognition, Specificity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ling, N. S. Pannu, A. Boodhoo, G. D. Armstrong, C. G. Clark, J. L. Brunton, R. J. Read
A Mutant Shiga-Like Toxin Iie Bound To Its Receptor Gb(3): Structure Of A Group Ii Shiga-Like Toxin With Altered Binding Specificity.
Structure Fold. Des. V. 8 253 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 22)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
1g: BETA-D-GALACTOSE (GALg)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
2c: ALPHA D-GALACTOSE (GLAc)
2d: ALPHA D-GALACTOSE (GLAd)
2e: ALPHA D-GALACTOSE (GLAe)
2f: ALPHA D-GALACTOSE (GLAf)
2g: ALPHA D-GALACTOSE (GLAg)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
4a: N-BUTANE (NBUa)
4b: N-BUTANE (NBUb)
4c: N-BUTANE (NBUc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
7
Ligand/Ion
BETA-D-GALACTOSE
2
GLA
7
Ligand/Ion
ALPHA D-GALACTOSE
3
GLC
5
Ligand/Ion
ALPHA-D-GLUCOSE
4
NBU
3
Ligand/Ion
N-BUTANE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:130 , THR A:131 , ASN A:132 , ARG A:133 , PHE A:163 , GAL A:191 , HOH A:195 , HOH A:196
BINDING SITE FOR RESIDUE GLA A 190
02
AC2
SOFTWARE
SER A:154 , ASN A:155 , GLY A:162 , GLA A:190 , GLC A:192 , HOH A:194 , HOH A:195 , HOH A:197 , HOH A:209 , HOH A:219
BINDING SITE FOR RESIDUE GAL A 191
03
AC3
SOFTWARE
ASN A:155 , GAL A:191 , NBU A:193 , GLC C:392 , THR E:546
BINDING SITE FOR RESIDUE GLC A 192
04
AC4
SOFTWARE
HOH B:51 , HOH B:129 , TRP B:230 , THR B:231 , ASN B:232 , ARG B:233 , PHE B:263 , GAL B:291 , GLU C:316
BINDING SITE FOR RESIDUE GLA B 290
05
AC5
SOFTWARE
HOH B:51 , HOH B:88 , HOH B:116 , HOH B:123 , SER B:254 , ASN B:255 , GLY B:262 , GLA B:290 , GLC B:292 , GLU C:316
BINDING SITE FOR RESIDUE GAL B 291
06
AC6
SOFTWARE
ASN B:255 , GAL B:291 , ASN D:435 , TRP E:534
BINDING SITE FOR RESIDUE GLC B 292
07
AC7
SOFTWARE
HOH C:72 , HOH C:74 , HOH C:120 , TRP C:330 , THR C:331 , ASN C:332 , ARG C:333 , PHE C:363 , ALA C:364 , GAL C:391
BINDING SITE FOR RESIDUE GLA C 390
08
AC8
SOFTWARE
HOH C:73 , HOH C:74 , HOH C:79 , SER C:354 , ASN C:355 , GLY C:362 , GLA C:390 , GLC C:392 , HOH D:160
BINDING SITE FOR RESIDUE GAL C 391
09
AC9
SOFTWARE
GLC A:192 , THR B:246 , ASN C:355 , GAL C:391 , NBU C:393
BINDING SITE FOR RESIDUE GLC C 392
10
BC1
SOFTWARE
GLU A:116 , HOH E:52 , HOH E:109 , TRP E:530 , THR E:531 , ASN E:532 , ARG E:533 , PHE E:563 , GAL E:591
BINDING SITE FOR RESIDUE GLA E 590
11
BC2
SOFTWARE
HOH E:53 , HOH E:108 , HOH E:109 , SER E:554 , ASN E:555 , GLY E:562 , GLA E:590 , GLC E:592
BINDING SITE FOR RESIDUE GAL E 591
12
BC3
SOFTWARE
HOH E:89 , ASN E:555 , GAL E:591 , NBU E:593
BINDING SITE FOR RESIDUE GLC E 592
13
BC4
SOFTWARE
LYS A:113 , ASN A:115 , THR A:121 , GLU A:128 , TRP A:130 , GAL A:171 , HOH A:199
BINDING SITE FOR RESIDUE GLA A 170
14
BC5
SOFTWARE
ASP A:117 , TRP A:130 , GLY A:160 , GLA A:170 , GLC A:172
BINDING SITE FOR RESIDUE GAL A 171
15
BC6
SOFTWARE
GAL A:171
BINDING SITE FOR RESIDUE GLC A 172
16
BC7
SOFTWARE
HOH B:128 , LYS B:213 , ASN B:215 , THR B:221 , GLU B:228 , TRP B:230 , GAL B:271
BINDING SITE FOR RESIDUE GLA B 270
17
BC8
SOFTWARE
ASP B:217 , THR B:219 , TRP B:230 , GLY B:260 , GLA B:270
BINDING SITE FOR RESIDUE GAL B 271
18
BC9
SOFTWARE
HOH E:86 , LYS E:513 , ASN E:515 , THR E:521 , GLU E:528 , TRP E:530 , GAL E:571
BINDING SITE FOR RESIDUE GLA E 570
19
CC1
SOFTWARE
ASP E:517 , THR E:519 , TRP E:530 , GLY E:560 , GLA E:570
BINDING SITE FOR RESIDUE GAL E 571
20
CC2
SOFTWARE
LEU A:145 , GLC A:192
BINDING SITE FOR RESIDUE NBU A 193
21
CC3
SOFTWARE
GLC C:392
BINDING SITE FOR RESIDUE NBU C 393
22
CC4
SOFTWARE
ASP B:203 , CYS B:204 , GLC E:592
BINDING SITE FOR RESIDUE NBU E 593
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2bosa_ (A:)
1b: SCOP_d2bosb_ (B:)
1c: SCOP_d2bosc_ (C:)
1d: SCOP_d2bosd_ (D:)
1e: SCOP_d2bose_ (E:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Verotoxin-1/shiga-toxin, B-pentamer
(19)
Escherichia coli [TaxId: 562]
(14)
1a
d2bosa_
A:
1b
d2bosb_
B:
1c
d2bosc_
C:
1d
d2bosd_
D:
1e
d2bose_
E:
[
close SCOP info
]
CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2bosA00 (A:102-169)
1b: CATH_2bosB00 (B:202-269)
1c: CATH_2bosC00 (C:302-369)
1d: CATH_2bosD00 (D:402-469)
1e: CATH_2bosE00 (E:502-569)
View:
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)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.70, no name defined]
(18)
Escherichia coli. Organism_taxid: 562.
(6)
1a
2bosA00
A:102-169
1b
2bosB00
B:202-269
1c
2bosC00
C:302-369
1d
2bosD00
D:402-469
1e
2bosE00
E:502-569
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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all
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Sidechain
Hetero
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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