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2BOJ
Asym. Unit
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Asym.Unit (90 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) COMPLEXED WITH METHYL-B-D-ARABINOPYRANOSIDE
Authors
:
C. D. Sabin, E. P. Mitchell, M. Wimmerova, A. Imberty
Date
:
12 Apr 05 (Deposition) - 22 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lectin, Arabinose, Calcium, Lewis A, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Sabin, E. P. Mitchell, M. Pokarna, C. Gautier, J. -P. Utille, M. Wimmerova, A. Imberty
Binding Of Different Monosaccharides By Lectin Pa-Iil From Pseudoman Aeruginosa: Thermodynamics Data Correlated With X-Ray Structures.
Febs Lett. V. 580 982 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: METHYL BETA-D-ARABINOPYRANOSIDE (ARWa)
1b: METHYL BETA-D-ARABINOPYRANOSIDE (ARWb)
1c: METHYL BETA-D-ARABINOPYRANOSIDE (ARWc)
1d: METHYL BETA-D-ARABINOPYRANOSIDE (ARWd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ARW
4
Ligand/Ion
METHYL BETA-D-ARABINOPYRANOSIDE
2
CA
8
Ligand/Ion
CALCIUM ION
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , ARW A:1115 , GLY C:114
BINDING SITE FOR RESIDUE CA A1116
02
AC2
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , ARW A:1115
BINDING SITE FOR RESIDUE CA A1117
03
AC3
SOFTWARE
ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , ARW B:1115 , GLY D:114
BINDING SITE FOR RESIDUE CA B1116
04
AC4
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , ARW B:1115
BINDING SITE FOR RESIDUE CA B1117
05
AC5
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , ARW C:1115
BINDING SITE FOR RESIDUE CA C1116
06
AC6
SOFTWARE
GLY A:114 , ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , ARW C:1115
BINDING SITE FOR RESIDUE CA C1117
07
AC7
SOFTWARE
SER B:44 , ASN B:46 , ALA B:48 , SER C:44 , THR C:45 , ASN C:46 , HOH C:2073 , HOH C:2138 , HOH C:2139
BINDING SITE FOR RESIDUE SO4 C1118
08
AC8
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , ARW D:1115
BINDING SITE FOR RESIDUE CA D1116
09
AC9
SOFTWARE
GLY B:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , ARW D:1115
BINDING SITE FOR RESIDUE CA D1117
10
BC1
SOFTWARE
ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:1116 , CA A:1117 , HOH A:2156 , GLY C:114
BINDING SITE FOR RESIDUE ARW A1115
11
BC2
SOFTWARE
ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:1116 , CA B:1117 , HOH B:2119 , GLY D:114
BINDING SITE FOR RESIDUE ARW B1115
12
BC3
SOFTWARE
GLY A:114 , ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:1116 , CA C:1117 , HOH C:2128
BINDING SITE FOR RESIDUE ARW C1115
13
BC4
SOFTWARE
GLY B:114 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:1116 , CA D:1117 , HOH D:2171
BINDING SITE FOR RESIDUE ARW D1115
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2boja_ (A:)
1b: SCOP_d2bojb_ (B:)
1c: SCOP_d2bojc_ (C:)
1d: SCOP_d2bojd_ (D:)
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
automated matches
(14)
Pseudomonas aeruginosa [TaxId: 208964]
(2)
1a
d2boja_
A:
1b
d2bojb_
B:
1c
d2bojc_
C:
1d
d2bojd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2bojA00 (A:1-114)
1b: CATH_2bojB00 (B:1-114)
1c: CATH_2bojC00 (C:1-114)
1d: CATH_2bojD00 (D:1-114)
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 208964. Strain: pao1.
(2)
1a
2bojA00
A:1-114
1b
2bojB00
B:1-114
1c
2bojC00
C:1-114
1d
2bojD00
D:1-114
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Pfam Domains
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Asymmetric Unit 1
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