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2BO9
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (195 KB)
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(1)
Title
:
HUMAN CARBOXYPEPTIDASE A4 IN COMPLEX WITH HUMAN LATEXIN.
Authors
:
I. Pallares, R. Bonet, R. Garcia-Castellanos, S. Ventura, F. X. Aviles J. Vendrell, F. X. Gomis-Rueth
Date
:
08 Apr 05 (Deposition) - 15 Apr 05 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Metallocarboxypeptidase, X-Ray Crystal Structure, Endogenous Protein Inhibitor, Latexin, Metalloprotease Carboxypeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Pallares, R. Bonet, R. Garcia-Castellanos, S. Ventura, F. X. Aviles, J. Vendrell, F. X. Gomis-Rueth
Structure Of Human Carboxypeptidase A4 With Its Endogenous Protein Inhibitor, Latexin.
Proc. Natl. Acad. Sci. Usa V. 102 3978 2005
[
close entry info
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETONE (ACNa)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
2j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
2k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
2l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: VALINE (VALa)
4b: VALINE (VALb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACN
1
Ligand/Ion
ACETONE
2
MPD
12
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
VAL
2
Mod. Amino Acid
VALINE
5
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:148 , HOH A:1075 , HOH A:1239 , HOH A:1038 , HOH A:1146 , HOH A:1207 , HOH A:1028
BINDING SITE FOR RESIDUE NAG A 901
02
AC2
SOFTWARE
ASN C:148 , HOH C:718 , HOH C:599 , HOH C:661 , HOH C:568
BINDING SITE FOR RESIDUE NAG C 901
03
AC3
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:196 , HOH A:1003
BINDING SITE FOR RESIDUE ZN A 999
04
AC4
SOFTWARE
HIS C:69 , GLU C:72 , HIS C:196 , HOH C:503
BINDING SITE FOR RESIDUE ZN C 999
05
AC5
SOFTWARE
HIS C:69 , ARG C:127 , ASN C:144 , ARG C:145 , MET C:203 , TYR C:248 , GLU C:270 , HOH C:503
BINDING SITE FOR RESIDUE VAL A 998
06
AC6
SOFTWARE
HIS A:69 , ARG A:127 , ASN A:144 , ARG A:145 , MET A:203 , TYR A:248 , GLU A:270 , HOH A:1014 , HOH A:1003
BINDING SITE FOR RESIDUE VAL C 998
07
AC7
SOFTWARE
ASP C:215 , TYR C:259 , LYS C:264 , HOH C:596 , HOH C:746
BINDING SITE FOR RESIDUE MPD L 1
08
AC8
SOFTWARE
TYR C:277 , LYS D:64 , HIS D:138
BINDING SITE FOR RESIDUE MPD L 2
09
AC9
SOFTWARE
GLY C:275 , GLN D:18 , ASN D:19 , GLU D:33 , TRP D:141 , MET D:160 , HOH D:465 , HOH D:421 , HOH D:482
BINDING SITE FOR RESIDUE MPD L 3
10
BC1
SOFTWARE
HOH C:639 , VAL D:34 , HOH D:517 , HOH D:471 , HOH D:497
BINDING SITE FOR RESIDUE MPD L 4
11
BC2
SOFTWARE
ASN C:159 , GLU D:191 , ARG D:214 , HOH D:519 , HOH D:464
BINDING SITE FOR RESIDUE MPD L 5
12
BC3
SOFTWARE
PRO A:30 , ASP A:31 , HOH A:1248 , HOH A:1224
BINDING SITE FOR RESIDUE MPD L 6
13
BC4
SOFTWARE
HOH A:1196 , VAL B:34 , HOH B:572 , HOH B:407 , HOH B:442
BINDING SITE FOR RESIDUE MPD L 7
14
BC5
SOFTWARE
ASP A:215 , TYR A:259 , LYS A:264 , HOH A:1249
BINDING SITE FOR RESIDUE MPD L 8
15
BC6
SOFTWARE
GLY A:275 , HOH A:1040 , GLN B:18 , ASN B:19 , TRP B:141 , LYS B:159 , MET B:160 , HOH B:519 , HOH B:508 , HOH B:473
BINDING SITE FOR RESIDUE MPD L 9
16
BC7
SOFTWARE
TYR A:277 , LYS B:64 , THR B:134 , HIS B:138
BINDING SITE FOR RESIDUE MPD L 10
17
BC8
SOFTWARE
ARG A:58 , GLN A:184 , LYS A:185 , HIS A:186 , GLU D:118 , ALA D:119 , GLN D:120 , HOH A:1042
BINDING SITE FOR RESIDUE MPD L 11
18
BC9
SOFTWARE
GLU B:118 , ARG C:58 , GLN C:184 , LYS C:185 , HIS C:186 , HOH B:478
BINDING SITE FOR RESIDUE MPD L 12
19
CC1
SOFTWARE
HOH B:428 , GLU D:132
BINDING SITE FOR RESIDUE ACN L 13
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020393 (P46T, chain A/C, )
2: VAR_019117 (R53R, chain B/D, )
3: VAR_048595 (R71L, chain A/C, )
4: VAR_062139 (T134M, chain B/D, )
5: VAR_020394 (G191C, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020393
P
157
T
CBPA4_HUMAN
Polymorphism
3735051
A/C
P
46
T
2
UniProt
VAR_019117
H
53
R
LXN_HUMAN
Polymorphism
8455
B/D
R
53
R
3
UniProt
VAR_048595
R
183
L
CBPA4_HUMAN
Polymorphism
3735053
A/C
R
71
L
4
UniProt
VAR_062139
T
134
M
LXN_HUMAN
Polymorphism
59718588
B/D
T
134
M
5
UniProt
VAR_020394
G
303
C
CBPA4_HUMAN
Polymorphism
2171492
A/C
G
191
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_ZN_1 (A:60-82,C:60-82)
2: CARBOXYPEPT_ZN_2 (A:196-206,C:196-206)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_ZN_1
PS00132
Zinc carboxypeptidases, zinc-binding region 1 signature.
CBPA4_HUMAN
172-194
2
A:60-82
C:60-82
2
CARBOXYPEPT_ZN_2
PS00133
Zinc carboxypeptidases, zinc-binding region 2 signature.
CBPA4_HUMAN
308-318
2
A:196-206
C:196-206
[
close PROSITE info
]
Exons
(14, 28)
Info
All Exons
Exon 1.6 (A:3-17 | C:3-17)
Exon 1.7c (A:18-51 | C:18-51)
Exon 1.8b (A:52-85 | C:52-85)
Exon 1.9c (A:86-122 | C:86-122)
Exon 1.10b (A:123-153 | C:123-153)
Exon 1.11 (A:153-219 | C:153-219)
Exon 1.12 (A:220-248 | C:220-248)
Exon 1.13b (A:248-308 | C:248-308)
Exon 2.1 (B:1-43 | D:1-43)
Exon 2.2 (B:44-64 | D:44-64)
Exon 2.3a (B:65-124 | D:65-124)
Exon 2.4 (B:124-169 | D:124-169)
Exon 2.5 (B:170-190 | D:170-190)
Exon 2.6 (B:191-217 | D:191-217)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4a/1.6
02: Boundary 1.6/1.7c
03: Boundary 1.7c/1.8b
04: Boundary 1.8b/1.9c
05: Boundary 1.9c/1.10b
06: Boundary 1.10b/1.11
07: Boundary 1.11/1.12
08: Boundary 1.12/1.13b
09: Boundary 1.13b/-
10: Boundary -/2.1
11: Boundary 2.1/2.2
12: Boundary 2.2/2.3a
13: Boundary 2.3a/2.4
14: Boundary 2.4/2.5
15: Boundary 2.5/2.6
16: Boundary 2.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000222482
1a
ENSE00001175329
chr7:
129932993-129933088
96
CBPA4_HUMAN
1-23
23
0
-
-
1.3
ENST00000222482
3
ENSE00000882290
chr7:
129938586-129938667
82
CBPA4_HUMAN
23-50
28
0
-
-
1.4a
ENST00000222482
4a
ENSE00000723226
chr7:
129939110-129939244
135
CBPA4_HUMAN
51-95
45
0
-
-
1.6
ENST00000222482
6
ENSE00000723228
chr7:
129940656-129940754
99
CBPA4_HUMAN
96-128
33
2
A:3-17
C:3-17
15
15
1.7c
ENST00000222482
7c
ENSE00000723230
chr7:
129944318-129944419
102
CBPA4_HUMAN
129-162
34
2
A:18-51
C:18-51
34
34
1.8b
ENST00000222482
8b
ENSE00000723233
chr7:
129945656-129945760
105
CBPA4_HUMAN
163-197
35
2
A:52-85
C:52-85
35
35
1.9c
ENST00000222482
9c
ENSE00000723234
chr7:
129946627-129946737
111
CBPA4_HUMAN
198-234
37
2
A:86-122
C:86-122
37
37
1.10b
ENST00000222482
10b
ENSE00000723236
chr7:
129948147-129948237
91
CBPA4_HUMAN
235-265
31
2
A:123-153
C:123-153
31
31
1.11
ENST00000222482
11
ENSE00000723239
chr7:
129950627-129950826
200
CBPA4_HUMAN
265-331
67
2
A:153-219
C:153-219
67
67
1.12
ENST00000222482
12
ENSE00000723240
chr7:
129951878-129951962
85
CBPA4_HUMAN
332-360
29
2
A:220-248
C:220-248
29
29
1.13b
ENST00000222482
13b
ENSE00001279439
chr7:
129962329-129964019
1691
CBPA4_HUMAN
360-421
62
2
A:248-308
C:248-308
61
61
2.1
ENST00000264265
1
ENSE00000801685
chr3:
158390482-158390139
344
LXN_HUMAN
1-43
43
2
B:1-43
D:1-43
43
43
2.2
ENST00000264265
2
ENSE00000453467
chr3:
158388808-158388746
63
LXN_HUMAN
44-64
21
2
B:44-64
D:44-64
21
21
2.3a
ENST00000264265
3a
ENSE00000968161
chr3:
158387399-158387222
178
LXN_HUMAN
65-124
60
2
B:65-124
D:65-124
60
60
2.4
ENST00000264265
4
ENSE00000453469
chr3:
158386921-158386785
137
LXN_HUMAN
124-169
46
2
B:124-169
D:124-169
46
46
2.5
ENST00000264265
5
ENSE00000779944
chr3:
158384863-158384801
63
LXN_HUMAN
170-190
21
2
B:170-190
D:170-190
21
21
2.6
ENST00000264265
6
ENSE00001268981
chr3:
158384533-158384203
331
LXN_HUMAN
191-222
32
2
B:191-217
D:191-217
27
27
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2bo9b1 (B:1-98)
1b: SCOP_d2bo9b2 (B:99-217)
1c: SCOP_d2bo9d1 (D:1-98)
1d: SCOP_d2bo9d2 (D:99-217)
2a: SCOP_d2bo9a1 (A:4-307)
2b: SCOP_d2bo9c_ (C:)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Latexin-like
(2)
Protein domain
:
Latexin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2bo9b1
B:1-98
1b
d2bo9b2
B:99-217
1c
d2bo9d1
D:1-98
1d
d2bo9d2
D:99-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Pancreatic carboxypeptidases
(77)
Protein domain
:
Carboxypeptidase A
(41)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d2bo9a1
A:4-307
2b
d2bo9c_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (203 KB)
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