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2BNS
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
LIPIDIC CUBIC PHASE GROWN REACTION CENTRE FROM RHODOBACTER SPHAEROIDES, EXCITED STATE
Authors
:
G. Katona, A. Snijder, P. Gourdon, U. Andreasson, O. Hansson, L. E. Andreasson, R. Neutze
Date
:
31 Mar 05 (Deposition) - 27 May 05 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Photosynthesis, Membrane Protein, Intermediate Trapping, Qa-P+ Charge Separated State, Bacteriochlorophyll, Chromophore, Electron Transport, Reaction Centre
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Katona, A. Snijder, P. Gourdon, U. Andreasson, O. Hansson, L. E. Andreasson, R. Neutze
Conformational Regulation Of Charge Recombination Reactions In A Photosynthetic Bacterial Reaction Centre
Nat. Struct. Mol. Biol. V. 12 630 2005
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Hetero Components
(7, 12)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN (BPHa)
2b: BACTERIOPHEOPHYTIN (BPHb)
3a: CHLORIDE ION (CLa)
4a: FE (II) ION (FE2a)
5a: 2-T-BUTYLAMINO-4-ETHYLAMINO-6-METH... (MSTa)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
7a: UBIQUINONE-10 (U10a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN
3
CL
1
Ligand/Ion
CHLORIDE ION
4
FE2
1
Ligand/Ion
FE (II) ION
5
MST
1
Ligand/Ion
2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE
6
PO4
2
Ligand/Ion
PHOSPHATE ION
7
U10
1
Ligand/Ion
UBIQUINONE-10
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:190 , HIS A:230 , HIS B:219 , GLU B:234 , HIS B:266
BINDING SITE FOR RESIDUE FE2 B1305
02
AC2
SOFTWARE
ASN A:199 , LYS A:202 , HIS B:145 , ARG B:267
BINDING SITE FOR RESIDUE PO4 B1308
03
AC3
SOFTWARE
LYS A:202 , GLY B:143 , LYS B:144 , TRP B:148 , HOH B:2027
BINDING SITE FOR RESIDUE PO4 B1309
04
AC4
SOFTWARE
ARG B:132 , ARG B:136
BINDING SITE FOR RESIDUE CL B1307
05
AC5
SOFTWARE
PHE A:97 , ALA A:127 , TYR A:128 , LEU A:131 , VAL A:157 , THR A:160 , TYR A:162 , ASN A:166 , HIS A:168 , HIS A:173 , ILE A:177 , PHE A:180 , SER A:244 , MET A:248 , BCL A:1283 , BPH A:1284 , BCL B:1302 , BCL B:1303
BINDING SITE FOR RESIDUE BCL A1282
06
AC6
SOFTWARE
TYR A:128 , LEU A:131 , PHE A:146 , ILE A:150 , HIS A:153 , LEU A:154 , BCL A:1282 , BPH A:1284 , HOH A:2036 , PHE B:197 , GLY B:203 , ILE B:206 , ALA B:207 , TYR B:210 , GLY B:211 , BCL B:1303
BINDING SITE FOR RESIDUE BCL A1283
07
AC7
SOFTWARE
PHE A:97 , TRP A:100 , GLU A:104 , ILE A:117 , PHE A:121 , ALA A:124 , HIS A:153 , VAL A:241 , BCL A:1282 , BCL A:1283 , TYR B:210 , ALA B:213 , LEU B:214 , TRP B:252 , MET B:256
BINDING SITE FOR RESIDUE BPH A1284
08
AC8
SOFTWARE
LEU A:189 , LEU A:193 , GLU A:212 , ASP A:213 , PHE A:216 , TYR A:222 , SER A:223 , ILE A:224 , GLY A:225 , ILE A:229
BINDING SITE FOR RESIDUE MST A1285
09
AC9
SOFTWARE
MET A:174 , ILE A:177 , SER A:178 , THR A:182 , BCL A:1282 , HOH A:2021 , TRP B:157 , ILE B:179 , HIS B:182 , LEU B:183 , THR B:186 , BCL B:1303 , BPH B:1304
BINDING SITE FOR RESIDUE BCL B1302
10
BC1
SOFTWARE
VAL A:157 , TYR A:162 , PHE A:181 , BCL A:1282 , BCL A:1283 , ALA B:153 , LEU B:156 , LEU B:160 , THR B:186 , ASN B:187 , PHE B:189 , LEU B:196 , PHE B:197 , HIS B:202 , SER B:205 , ILE B:206 , TYR B:210 , VAL B:276 , GLY B:280 , ILE B:284 , BCL B:1302 , BPH B:1304
BINDING SITE FOR RESIDUE BCL B1303
11
BC2
SOFTWARE
PHE A:181 , ALA A:184 , LEU A:185 , LEU A:189 , LEU A:219 , GLY B:63 , TRP B:129 , THR B:146 , ALA B:149 , PHE B:150 , ALA B:273 , THR B:277 , BCL B:1302 , BCL B:1303
BINDING SITE FOR RESIDUE BPH B1304
12
BC3
SOFTWARE
MET B:218 , HIS B:219 , THR B:222 , ALA B:248 , ALA B:249 , TRP B:252 , MET B:256 , PHE B:258 , ASN B:259 , ALA B:260 , ILE B:265 , TRP B:268 , MET B:272
BINDING SITE FOR RESIDUE U10 B1306
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (A:166-192,A:166-192,B:195-221,B:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
A:166-192
RCEL_RHOSH
167-193
1
A:166-192
RCEM_RHOS4
196-222
1
B:195-221
RCEM_RHOSH
196-222
1
B:195-221
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d2bnsc2 (C:36-247)
2a: SCOP_d2bnsa_ (A:)
2b: SCOP_d2bnsb_ (B:)
3a: SCOP_d2bnsc1 (C:11-35)
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Superfamilies
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d2bnsc2
C:36-247
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
automated matches
(44)
Rhodobacter sphaeroides [TaxId: 1063]
(31)
2a
d2bnsa_
A:
2b
d2bnsb_
B:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
3a
d2bnsc1
C:11-35
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2bnsC02 (C:117-247)
2a: CATH_2bnsC01 (C:12-116)
3a: CATH_2bnsB01 (B:1-143)
3b: CATH_2bnsB02 (B:144-302)
3c: CATH_2bnsA01 (A:1-163)
3d: CATH_2bnsA02 (A:164-263)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
1a
2bnsC02
C:117-247
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
2a
2bnsC01
C:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
3a
2bnsB01
B:1-143
3b
2bnsB02
B:144-302
3c
2bnsA01
A:1-163
3d
2bnsA02
A:164-263
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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