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2BMI
Asym. Unit
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Asym.Unit (85 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
METALLO-BETA-LACTAMASE
Authors
:
A. Carfi, E. Duee, O. Dideberg
Date
:
17 Sep 98 (Deposition) - 23 Sep 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Lactamase, Metallo Beta-Lactamase, Zinc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Carfi, E. Duee, R. Paul-Soto, M. Galleni, J. M. Frere, O. Dideberg
X-Ray Structure Of The Znii Beta-Lactamase From Bacteroides Fragilis In An Orthorhombic Crystal Form.
Acta Crystallogr. , Sect. D V. 54 45 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
NA
2
Ligand/Ion
SODIUM ION
2
ZN
4
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AS1 (AUTHOR)
08: AS2 (AUTHOR)
09: BS1 (AUTHOR)
10: BS2 (AUTHOR)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:82 , HIS A:84 , HIS A:145 , ZN A:272 , HOH A:276
BINDING SITE FOR RESIDUE ZN A 271
02
AC2
SOFTWARE
HIS B:82 , HIS B:84 , HIS B:145 , ZN B:272 , HOH B:278
BINDING SITE FOR RESIDUE ZN B 271
03
AC3
SOFTWARE
ASP A:86 , CYS A:164 , HIS A:206 , ZN A:271 , HOH A:276 , HOH A:492
BINDING SITE FOR RESIDUE ZN A 272
04
AC4
SOFTWARE
ASN A:38 , ASP A:52 , ASP A:86 , HOH A:493 , HOH A:494
BINDING SITE FOR RESIDUE NA A 275
05
AC5
SOFTWARE
ASP B:86 , CYS B:164 , HIS B:206 , ZN B:271 , HOH B:278 , HOH B:474
BINDING SITE FOR RESIDUE ZN B 272
06
AC6
SOFTWARE
ASN B:38 , ASP B:52 , ASP B:86 , HOH B:279 , HOH B:475
BINDING SITE FOR RESIDUE NA B 275
07
AS1
AUTHOR
HIS A:82 , HIS A:84 , HIS A:145
PROTEIN ZINC LIGANDS
08
AS2
AUTHOR
HIS A:206 , CYS A:164 , ASP A:86
PROTEIN ZINC LIGANDS
09
BS1
AUTHOR
HIS B:82 , HIS B:84 , HIS B:145
PROTEIN ZINC LIGANDS
10
BS2
AUTHOR
HIS B:206 , CYS B:164 , ASP B:86
PROTEIN ZINC LIGANDS
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_B_1 (A:79-98,B:79-98)
2: BETA_LACTAMASE_B_2 (A:155-167,B:155-167)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_B_1
PS00743
Beta-lactamases class B signature 1.
BLAB_BACFG
96-115
2
A:79-98
B:79-98
2
BETA_LACTAMASE_B_2
PS00744
Beta-lactamases class B signature 2.
BLAB_BACFG
172-184
2
A:155-167
B:155-167
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bmia_ (A:)
1b: SCOP_d2bmib_ (B:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
Zn metallo-beta-lactamase
(93)
Protein domain
:
Zn metallo-beta-lactamase
(63)
Bacteroides fragilis [TaxId: 817]
(9)
1a
d2bmia_
A:
1b
d2bmib_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2bmiB00 (B:3-232)
1b: CATH_2bmiA00 (A:4-231)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Metallo-beta-lactamase; Chain A
(92)
Homologous Superfamily
:
Metallo-beta-lactamase, chain A
(92)
Bacteroides fragilis. Organism_taxid: 817. Strain: bl21.
(1)
1a
2bmiB00
B:3-232
1b
2bmiA00
A:4-231
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (85 KB)
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