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2BL2
Asym. Unit
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Asym.Unit (284 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
THE MEMBRANE ROTOR OF THE V-TYPE ATPASE FROM ENTEROCOCCUS HIRAE
Authors
:
T. Murata, I. Yamato, Y. Kakinuma, A. G. W. Leslie, J. E. Walker
Date
:
25 Feb 05 (Deposition) - 05 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
V-Type Atpase, K-Ring, Membrane Rotor, Sodium Transporter, Hydrogen Ion Transport, Hydrolase, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Murata, I. Yamato, Y. Kakinuma, A. G. W. Leslie, J. E. Walker
Structure Of The Rotor Of The Vacuolar-Type Na- Atpase From Enterococcus Hirae
Science V. 308 654 2005
[
close entry info
]
Hetero Components
(3, 82)
Info
All Hetero Components
1a: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGa)
1aa: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGaa)
1ab: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGab)
1ac: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGac)
1ad: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGad)
1ae: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGae)
1af: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGaf)
1ag: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGag)
1ah: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGah)
1ai: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGai)
1aj: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGaj)
1ak: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGak)
1al: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGal)
1am: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGam)
1an: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGan)
1ao: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGao)
1ap: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGap)
1aq: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGaq)
1ar: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGar)
1as: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGas)
1at: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGat)
1au: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGau)
1av: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGav)
1aw: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGaw)
1ax: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGax)
1b: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGb)
1c: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGc)
1d: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGd)
1e: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGe)
1f: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGf)
1g: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGg)
1h: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGh)
1i: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGi)
1j: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGj)
1k: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGk)
1l: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGl)
1m: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGm)
1n: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGn)
1o: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGo)
1p: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGp)
1q: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGq)
1r: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGr)
1s: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGs)
1t: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGt)
1u: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGu)
1v: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGv)
1w: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGw)
1x: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGx)
1y: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGy)
1z: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGz)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
2j: SODIUM ION (NAj)
3a: UNDECYL-MALTOSIDE (UMQa)
3b: UNDECYL-MALTOSIDE (UMQb)
3c: UNDECYL-MALTOSIDE (UMQc)
3d: UNDECYL-MALTOSIDE (UMQd)
3e: UNDECYL-MALTOSIDE (UMQe)
3f: UNDECYL-MALTOSIDE (UMQf)
3g: UNDECYL-MALTOSIDE (UMQg)
3h: UNDECYL-MALTOSIDE (UMQh)
3i: UNDECYL-MALTOSIDE (UMQi)
3j: UNDECYL-MALTOSIDE (UMQj)
3k: UNDECYL-MALTOSIDE (UMQk)
3l: UNDECYL-MALTOSIDE (UMQl)
3m: UNDECYL-MALTOSIDE (UMQm)
3n: UNDECYL-MALTOSIDE (UMQn)
3o: UNDECYL-MALTOSIDE (UMQo)
3p: UNDECYL-MALTOSIDE (UMQp)
3q: UNDECYL-MALTOSIDE (UMQq)
3r: UNDECYL-MALTOSIDE (UMQr)
3s: UNDECYL-MALTOSIDE (UMQs)
3t: UNDECYL-MALTOSIDE (UMQt)
3u: UNDECYL-MALTOSIDE (UMQu)
3v: UNDECYL-MALTOSIDE (UMQv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LHG
50
Ligand/Ion
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
2
NA
10
Ligand/Ion
SODIUM ION
3
UMQ
22
Ligand/Ion
UNDECYL-MALTOSIDE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:61 , PRO A:62 , THR A:64 , GLN A:65 , GLN A:110 , GLU A:139
BINDING SITE FOR RESIDUE NA A1157
02
AC2
SOFTWARE
LEU B:61 , PRO B:62 , THR B:64 , GLN B:65 , GLN B:110 , GLU B:139
BINDING SITE FOR RESIDUE NA B1157
03
AC3
SOFTWARE
LEU C:61 , PRO C:62 , THR C:64 , GLN C:65 , GLN C:110 , GLU C:139
BINDING SITE FOR RESIDUE NA C1157
04
AC4
SOFTWARE
LEU D:61 , PRO D:62 , THR D:64 , GLN D:65 , GLN D:110 , GLU D:139
BINDING SITE FOR RESIDUE NA D1157
05
AC5
SOFTWARE
LEU E:61 , PRO E:62 , THR E:64 , GLN E:65 , GLN E:110 , GLU E:139
BINDING SITE FOR RESIDUE NA E1157
06
AC6
SOFTWARE
LEU F:61 , PRO F:62 , THR F:64 , GLN F:65 , GLN F:110 , GLU F:139
BINDING SITE FOR RESIDUE NA F1157
07
AC7
SOFTWARE
LEU G:61 , PRO G:62 , THR G:64 , GLN G:65 , GLN G:110 , GLU G:139
BINDING SITE FOR RESIDUE NA G1157
08
AC8
SOFTWARE
LEU H:61 , PRO H:62 , THR H:64 , GLN H:65 , GLN H:110 , GLU H:139
BINDING SITE FOR RESIDUE NA H1157
09
AC9
SOFTWARE
LEU I:61 , PRO I:62 , THR I:64 , GLN I:65 , GLN I:110 , GLU I:139
BINDING SITE FOR RESIDUE NA I1157
10
BC1
SOFTWARE
LEU J:61 , PRO J:62 , THR J:64 , GLN J:65 , GLN J:110 , GLU J:139
BINDING SITE FOR RESIDUE NA J1157
11
BC2
SOFTWARE
LEU A:17 , THR A:21 , PHE A:105 , HOH A:2032 , LYS B:32 , LHG B:1159 , PHE J:101 , PHE J:105 , LHG J:1158
BINDING SITE FOR RESIDUE LHG A1158
12
BC3
SOFTWARE
MET A:1 , MET A:2 , LEU A:17 , LHG A:1164 , LHG I:1165 , LHG J:1158
BINDING SITE FOR RESIDUE LHG A1159
13
BC4
SOFTWARE
LHG J:1158
BINDING SITE FOR RESIDUE LHG A1160
14
BC5
SOFTWARE
GLN A:54
BINDING SITE FOR RESIDUE UMQ A1162
15
BC6
SOFTWARE
GLU A:50 , PHE A:52 , GLY A:53
BINDING SITE FOR RESIDUE UMQ A1163
16
BC7
SOFTWARE
LHG A:1159 , MET B:1 , MET B:2 , LEU B:17 , LHG C:1159
BINDING SITE FOR RESIDUE LHG A1164
17
BC8
SOFTWARE
PHE A:101 , PHE A:105 , LEU B:17 , THR B:21 , HOH B:2033 , LYS C:32 , LHG C:1160
BINDING SITE FOR RESIDUE LHG B1158
18
BC9
SOFTWARE
LHG A:1158
BINDING SITE FOR RESIDUE LHG B1159
19
CC1
SOFTWARE
GLU B:50 , PHE B:52 , GLY B:53
BINDING SITE FOR RESIDUE UMQ B1163
20
CC2
SOFTWARE
PHE B:101 , LEU C:17 , THR C:21 , PHE C:105 , HOH C:2021 , LYS D:32
BINDING SITE FOR RESIDUE LHG C1158
21
CC3
SOFTWARE
LHG A:1164 , MET C:1 , MET C:2 , LEU C:17 , LHG C:1163
BINDING SITE FOR RESIDUE LHG C1159
22
CC4
SOFTWARE
LHG B:1158
BINDING SITE FOR RESIDUE LHG C1160
23
CC5
SOFTWARE
GLU C:50 , GLY C:53 , GLN C:54
BINDING SITE FOR RESIDUE UMQ C1162
24
CC6
SOFTWARE
LHG C:1159 , MET D:1 , MET D:2 , LEU D:17 , LHG D:1162
BINDING SITE FOR RESIDUE LHG C1163
25
CC7
SOFTWARE
GLN C:54 , PRO C:125 , THR C:129 , LYS F:123 , LYS F:124 , GLU F:126
BINDING SITE FOR RESIDUE UMQ C1164
26
CC8
SOFTWARE
PHE C:101 , PHE C:105 , LEU D:17 , THR D:21 , HOH D:2026 , LYS E:32
BINDING SITE FOR RESIDUE LHG D1158
27
CC9
SOFTWARE
GLU D:50 , GLY D:53
BINDING SITE FOR RESIDUE UMQ D1161
28
DC1
SOFTWARE
LHG C:1163 , MET E:1 , MET E:2 , LEU E:17 , LHG F:1159
BINDING SITE FOR RESIDUE LHG D1162
29
DC2
SOFTWARE
PHE D:101 , PHE D:105 , LEU E:17 , THR E:21 , HOH E:2028 , LYS F:32 , LHG F:1160
BINDING SITE FOR RESIDUE LHG E1158
30
DC3
SOFTWARE
GLU E:50 , GLY E:53 , GLN E:54
BINDING SITE FOR RESIDUE UMQ E1160
31
DC4
SOFTWARE
PHE E:101 , LEU F:17 , THR F:21 , PHE F:105 , LHG F:1160 , LHG F:1161 , HOH F:2034 , LYS G:32
BINDING SITE FOR RESIDUE LHG F1158
32
DC5
SOFTWARE
LHG D:1162 , MET F:1 , MET F:2 , LEU F:17 , LHG F:1164
BINDING SITE FOR RESIDUE LHG F1159
33
DC6
SOFTWARE
LHG E:1158 , LHG F:1158
BINDING SITE FOR RESIDUE LHG F1160
34
DC7
SOFTWARE
LHG F:1158
BINDING SITE FOR RESIDUE LHG F1161
35
DC8
SOFTWARE
GLU F:50 , GLY F:53 , GLN F:54
BINDING SITE FOR RESIDUE UMQ F1163
36
DC9
SOFTWARE
LHG F:1159 , LHG F:1166 , MET G:1 , MET G:2 , LEU G:17
BINDING SITE FOR RESIDUE LHG F1164
37
EC1
SOFTWARE
LHG F:1164 , MET H:1 , MET H:2 , LEU H:17 , LHG I:1159
BINDING SITE FOR RESIDUE LHG F1166
38
EC2
SOFTWARE
LYS C:123 , LYS C:124 , GLU C:126 , GLN F:54 , PRO F:125 , GLU F:126 , THR F:129
BINDING SITE FOR RESIDUE UMQ F1167
39
EC3
SOFTWARE
PHE F:101 , PHE F:105 , LEU G:17 , THR G:21 , HOH G:2036 , LYS H:32 , LHG H:1159
BINDING SITE FOR RESIDUE LHG G1158
40
EC4
SOFTWARE
GLU G:50 , GLY G:53 , HOH G:2018
BINDING SITE FOR RESIDUE UMQ G1160
41
EC5
SOFTWARE
PHE G:101 , PHE G:105 , LEU H:17 , THR H:21 , HOH H:2028 , HOH H:2043 , LYS I:32
BINDING SITE FOR RESIDUE LHG H1158
42
EC6
SOFTWARE
LHG G:1158
BINDING SITE FOR RESIDUE LHG H1159
43
EC7
SOFTWARE
GLY H:53 , GLN H:54
BINDING SITE FOR RESIDUE UMQ H1160
44
EC8
SOFTWARE
GLU H:50 , GLY H:53 , HOH H:2044
BINDING SITE FOR RESIDUE UMQ H1161
45
EC9
SOFTWARE
PHE H:101 , PHE H:105 , LEU I:17 , THR I:21 , LEU I:104 , PHE I:105 , HOH I:2055 , LYS J:32
BINDING SITE FOR RESIDUE LHG I1158
46
FC1
SOFTWARE
LHG F:1166 , MET I:1 , MET I:2 , LEU I:17 , LHG I:1165
BINDING SITE FOR RESIDUE LHG I1159
47
FC2
SOFTWARE
GLN I:54
BINDING SITE FOR RESIDUE UMQ I1163
48
FC3
SOFTWARE
GLU I:50 , PHE I:52 , GLY I:53 , HOH I:2056 , HOH I:2057
BINDING SITE FOR RESIDUE UMQ I1164
49
FC4
SOFTWARE
LHG A:1159 , LHG I:1159 , MET J:2 , LEU J:17
BINDING SITE FOR RESIDUE LHG I1165
50
FC5
SOFTWARE
LYS A:32 , LHG A:1158 , LHG A:1159 , LHG A:1160 , PHE I:101 , PHE I:105 , LEU J:17 , THR J:21 , LEU J:104
BINDING SITE FOR RESIDUE LHG J1158
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2bl2A00 (A:1-156)
1b: CATH_2bl2B00 (B:1-156)
1c: CATH_2bl2C00 (C:1-156)
1d: CATH_2bl2D00 (D:1-156)
1e: CATH_2bl2E00 (E:1-156)
1f: CATH_2bl2F00 (F:1-156)
1g: CATH_2bl2G00 (G:1-156)
1h: CATH_2bl2H00 (H:1-156)
1i: CATH_2bl2I00 (I:1-156)
1j: CATH_2bl2J00 (J:1-156)
View:
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Classes
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)
(
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Architectures
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
lithium bound rotor ring of v- atpase
(3)
Enterococcus hirae. Organism_taxid: 1354.
(1)
1a
2bl2A00
A:1-156
1b
2bl2B00
B:1-156
1c
2bl2C00
C:1-156
1d
2bl2D00
D:1-156
1e
2bl2E00
E:1-156
1f
2bl2F00
F:1-156
1g
2bl2G00
G:1-156
1h
2bl2H00
H:1-156
1i
2bl2I00
I:1-156
1j
2bl2J00
J:1-156
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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