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2BJP
Theor. Model
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Theoretical Model (57 KB)
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(1)
Title
:
THEORETICAL MODEL OF RAGE PROTEIN
Authors
:
A. Sah, S. Mahanta, M. Neeper, A. M. Schmidt
Date
:
07 Feb 05 (Deposition) - 08 Feb 05 (Release) - 08 Feb 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Immunoglobulin Domain, Glycoprotein, Transmembrane, Repeat, Signal, Alternative Splicing, Polymorphism, Mallena,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Neeper, A. M. Schmidt, A. Sah, S. Mahanta
Cloning And Expression Of A Cell Surface Receptor For Advanced Glycosylation End Products Of Proteins
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024500 (G82S, chain A, )
2: VAR_011338 (Q100R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024500
G
82
S
RAGE_HUMAN
Polymorphism
2070600
A
G
82
S
2
UniProt
VAR_011338
Q
100
R
RAGE_HUMAN
Polymorphism
---
A
Q
100
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:299-305)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
RAGE_HUMAN
299-305
1
A:299-305
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Exons
(11, 11)
Info
All Exons
Exon 1.33a (A:1-18)
Exon 1.33f (A:18-53)
Exon 1.34b (A:54-119)
Exon 1.35b (A:119-140)
Exon 1.36 (A:141-170)
Exon 1.37c (A:170-231)
Exon 1.37e (A:231-274)
Exon 1.38a (A:275-322)
Exon 1.39b (A:322-331)
Exon 1.39e (A:331-373)
Exon 1.40b (A:373-404)
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All Exon Boundaries
01: Boundary -/1.33a
02: Boundary 1.33a/1.33f
03: Boundary 1.33f/1.34b
04: Boundary 1.34b/1.35b
05: Boundary 1.35b/1.36
06: Boundary 1.36/1.37c
07: Boundary 1.37c/1.37e
08: Boundary 1.37e/1.38a
09: Boundary 1.38a/1.39b
10: Boundary 1.39b/1.39e
11: Boundary 1.39e/1.40b
12: Boundary 1.40b/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.33a
ENST00000375076
33a
ENSE00001633661
chr6:
32152101-32151948
154
RAGE_HUMAN
1-18
18
1
A:1-18
18
1.33f
ENST00000375076
33f
ENSE00001645680
chr6:
32151764-32151658
107
RAGE_HUMAN
18-53
36
1
A:18-53
36
1.34b
ENST00000375076
34b
ENSE00001790815
chr6:
32151527-32151332
196
RAGE_HUMAN
54-119
66
1
A:54-119
66
1.35b
ENST00000375076
35b
ENSE00001779959
chr6:
32151165-32151101
65
RAGE_HUMAN
119-140
22
1
A:119-140
22
1.36
ENST00000375076
36
ENSE00001713440
chr6:
32150978-32150891
88
RAGE_HUMAN
141-170
30
1
A:141-170
30
1.37c
ENST00000375076
37c
ENSE00002190296
chr6:
32150800-32150618
183
RAGE_HUMAN
170-231
62
1
A:170-231
62
1.37e
ENST00000375076
37e
ENSE00001645542
chr6:
32150475-32150345
131
RAGE_HUMAN
231-274
44
1
A:231-274
44
1.38a
ENST00000375076
38a
ENSE00001799555
chr6:
32150165-32150024
142
RAGE_HUMAN
275-322
48
1
A:275-322
48
1.39b
ENST00000375076
39b
ENSE00001770630
chr6:
32149409-32149383
27
RAGE_HUMAN
322-331
10
1
A:322-331
10
1.39e
ENST00000375076
39e
ENSE00001675079
chr6:
32149254-32149128
127
RAGE_HUMAN
331-373
43
1
A:331-373
43
1.40b
ENST00000375076
40b
ENSE00001903924
chr6:
32149016-32148745
272
RAGE_HUMAN
373-404
32
1
A:373-404
32
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SCOP Domains
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CATH Domains
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Pfam Domains
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