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2BJN
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (51 KB)
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Title
:
X-RAY STRUCTURE OF HUMAN TPC6
Authors
:
D. Kummel, J. J. Mueller, Y. Roske, R. Misselwitz, K. Bussow, U. Heinem
Date
:
04 Feb 05 (Deposition) - 20 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tpc6, Trapp Complex, Tethering, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kummel, J. J. Mueller, Y. Roske, R. Misselwitz, K. Bussow, U. Heinemann
The Structure Of The Trapp Subunit Tpc6 Suggests A Model For A Trapp Subcomplex.
Embo Rep. V. 6 787 2005
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:33 , LYS A:37 , ASN A:40 , ARG A:44 , HOH A:2055 , HOH A:2056 , HOH A:2057 , GLN B:47
BINDING SITE FOR RESIDUE SO4 A1160
2
AC2
SOFTWARE
TYR A:21 , GLU A:28 , VAL A:29 , ASN A:31 , GLY A:32 , ARG A:33 , CYS A:34 , ILE A:35 , GOL A:1163
BINDING SITE FOR RESIDUE SO4 A1161
3
AC3
SOFTWARE
ASN B:89 , GLN B:91 , ILE B:93 , MET B:156 , ILE B:157
BINDING SITE FOR RESIDUE SO4 B1160
4
AC4
SOFTWARE
GLY A:1 , PHE B:53 , THR B:54 , ARG B:59 , HOH B:2065 , HOH B:2066
BINDING SITE FOR RESIDUE SO4 B1161
5
AC5
SOFTWARE
GLN A:47 , ARG B:33 , LYS B:37 , ASN B:40 , ARG B:44 , HOH B:2067 , HOH B:2068
BINDING SITE FOR RESIDUE SO4 B1162
6
AC6
SOFTWARE
GLU A:39 , SER A:118 , ALA A:122 , THR A:142 , ALA A:143 , HOH A:2058 , LYS B:138
BINDING SITE FOR RESIDUE GOL A1162
7
AC7
SOFTWARE
TYR A:21 , ILE A:35 , GLU A:115 , SO4 A:1161
BINDING SITE FOR RESIDUE GOL A1163
8
AC8
SOFTWARE
LYS B:68 , CYS B:71 , LYS B:72 , ILE B:83
BINDING SITE FOR RESIDUE GOL B1163
9
AC9
SOFTWARE
LYS A:138 , GLU B:39 , SER B:118 , ALA B:122 , THR B:142 , ALA B:143
BINDING SITE FOR RESIDUE GOL B1164
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.1c (A:3-29 | B:3-29)
Exon 1.2a (A:30-52 | B:30-52)
Exon 1.2c (A:52-91 (gaps) | B:52-91)
Exon 1.3 (A:92-119 (gaps) | B:92-119 (gaps))
Exon 1.4 (A:120-151 | B:120-151)
Exon 1.5b (A:151-159 | B:151-159)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.2a
3: Boundary 1.2a/1.2c
4: Boundary 1.2c/1.3
5: Boundary 1.3/1.4
6: Boundary 1.4/1.5b
7: Boundary 1.5b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000330149
1c
ENSE00001846910
chr14:
39639526-39639219
308
TPC6B_HUMAN
1-27
27
2
A:3-29
B:3-29
27
27
1.2a
ENST00000330149
2a
ENSE00001298290
chr14:
39628754-39628687
68
TPC6B_HUMAN
28-50
23
2
A:30-52
B:30-52
23
23
1.2c
ENST00000330149
2c
ENSE00001318696
chr14:
39627606-39627489
118
TPC6B_HUMAN
50-89
40
2
A:52-91 (gaps)
B:52-91
40
40
1.3
ENST00000330149
3
ENSE00001334158
chr14:
39623498-39623415
84
TPC6B_HUMAN
90-117
28
2
A:92-119 (gaps)
B:92-119 (gaps)
28
28
1.4
ENST00000330149
4
ENSE00001297356
chr14:
39621043-39620950
94
TPC6B_HUMAN
118-149
32
2
A:120-151
B:120-151
32
32
1.5b
ENST00000330149
5b
ENSE00001869808
chr14:
39619585-39617016
2570
TPC6B_HUMAN
149-158
10
2
A:151-159
B:151-159
9
9
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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