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2BIV
Biol. Unit 3
Info
Asym.Unit (116 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE WILD-TYPE MBT DOMAINS OF HUMAN SCML2
Authors
:
C. M. Santiveri, M. D. Allen, F. Sait, M. Bycroft
Date
:
26 Jan 05 (Deposition) - 08 Feb 05 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Malignant Brain Tumor, Transcription Factor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Santiveri, B. C. Lechtenberg, M. D. Allen, A. Sathyamurthy, A. M. Jaulent, S. M. V. Freund, M. Bycroft
The Malignant Brain Tumor Repeats Of Human Scml2 Bind To Peptides Containing Monomethylated Lysine.
J. Mol. Biol. V. 382 1107 2008
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
IOD
4
Ligand/Ion
IODIDE ION
2
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
TRP C:107 , HOH C:2061
BINDING SITE FOR RESIDUE IOD C1245
2
AC7
SOFTWARE
TYR B:215 , TRP B:216 , HOH B:2208 , HOH C:2061
BINDING SITE FOR RESIDUE NA C1247
3
AC8
SOFTWARE
TRP C:35 , ARG C:231 , HOH C:2048
BINDING SITE FOR RESIDUE IOD C1248
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MBT (C:153-240)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SCML2_HUMAN
33-131
139-240
2
-
-
C:33-131
-
-
C:153-240
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2biva1 (A:32-138)
1b: SCOP_d2biva2 (A:139-243)
1c: SCOP_d2bivb1 (B:27-133)
1d: SCOP_d2bivb2 (B:140-243)
1e: SCOP_d2bivc1 (C:32-133)
1f: SCOP_d2bivc2 (C:153-243)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2biva1
A:32-138
1b
d2biva2
A:139-243
1c
d2bivb1
B:27-133
1d
d2bivb2
B:140-243
1e
d2bivc1
C:32-133
1f
d2bivc2
C:153-243
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2bivA02 (A:59-162)
1b: CATH_2bivC02 (C:59-162)
1c: CATH_2bivA01 (A:32-58,A:163-243)
1d: CATH_2bivC01 (C:32-58,C:163-243)
1e: CATH_2bivB01 (B:27-58,B:163-243)
1f: CATH_2bivB02 (B:59-162)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2bivA02
A:59-162
1b
2bivC02
C:59-162
1c
2bivA01
A:32-58,A:163-243
1d
2bivC01
C:32-58,C:163-243
1e
2bivB01
B:27-58,B:163-243
1f
2bivB02
B:59-162
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Pfam Domains
(0, 0)
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Chain C
Asymmetric Unit 1
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Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (41 KB)
Header - Biol.Unit 2
Biol.Unit 3 (37 KB)
Header - Biol.Unit 3
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