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2BIV
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE WILD-TYPE MBT DOMAINS OF HUMAN SCML2
Authors
:
C. M. Santiveri, M. D. Allen, F. Sait, M. Bycroft
Date
:
26 Jan 05 (Deposition) - 08 Feb 05 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Malignant Brain Tumor, Transcription Factor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Santiveri, B. C. Lechtenberg, M. D. Allen, A. Sathyamurthy, A. M. Jaulent, S. M. V. Freund, M. Bycroft
The Malignant Brain Tumor Repeats Of Human Scml2 Bind To Peptides Containing Monomethylated Lysine.
J. Mol. Biol. V. 382 1107 2008
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
10
Ligand/Ion
IODIDE ION
2
NA
2
Ligand/Ion
SODIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:216
BINDING SITE FOR RESIDUE IOD A1244
2
AC2
SOFTWARE
TRP B:35 , ARG B:231
BINDING SITE FOR RESIDUE IOD B1244
3
AC3
SOFTWARE
HIS B:34 , LYS B:162
BINDING SITE FOR RESIDUE IOD B1245
4
AC4
SOFTWARE
HOH B:2048
BINDING SITE FOR RESIDUE NA B1246
5
AC5
SOFTWARE
TRP B:216
BINDING SITE FOR RESIDUE IOD C1244
6
AC6
SOFTWARE
TRP C:107 , HOH C:2061
BINDING SITE FOR RESIDUE IOD C1245
7
AC7
SOFTWARE
TYR B:215 , TRP B:216 , HOH B:2208 , HOH C:2061
BINDING SITE FOR RESIDUE NA C1247
8
AC8
SOFTWARE
TRP C:35 , ARG C:231 , HOH C:2048
BINDING SITE FOR RESIDUE IOD C1248
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: MBT (A:33-131,B:33-131,C:33-131|A:139-2...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SCML2_HUMAN
33-131
139-240
6
A:33-131
B:33-131
C:33-131
A:139-240
B:140-240
C:153-240
[
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Exons
(5, 13)
Info
All Exons
Exon 1.3 (- | B:27-31 | -)
Exon 1.4 (A:32-54 | B:31-54 | C:32-54)
Exon 1.5 (A:55-133 | B:55-133 | C:55-133)
Exon 1.6 (A:133-162 | B:133-162 (gaps) | C:1...)
Exon 1.7 (A:163-243 | B:163-243 | C:163-243)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251900
1a
ENSE00001341544
X:18372847-18372712
136
SCML2_HUMAN
-
0
0
-
-
1.2
ENST00000251900
2
ENSE00002195410
X:18352215-18352170
46
SCML2_HUMAN
1-8
8
0
-
-
1.3
ENST00000251900
3
ENSE00001740872
X:18348775-18348707
69
SCML2_HUMAN
8-31
24
1
-
B:27-31
-
-
5
-
1.4
ENST00000251900
4
ENSE00001722015
X:18343097-18343027
71
SCML2_HUMAN
31-54
24
3
A:32-54
B:31-54
C:32-54
23
24
23
1.5
ENST00000251900
5
ENSE00001761590
X:18342213-18341979
235
SCML2_HUMAN
55-133
79
3
A:55-133
B:55-133
C:55-133
79
79
79
1.6
ENST00000251900
6
ENSE00001802908
X:18338540-18338452
89
SCML2_HUMAN
133-162
30
3
A:133-162
B:133-162 (gaps)
C:133-162 (gaps)
30
30
30
1.7
ENST00000251900
7
ENSE00001780951
X:18323335-18323092
244
SCML2_HUMAN
163-244
82
3
A:163-243
B:163-243
C:163-243
81
81
81
1.8
ENST00000251900
8
ENSE00001602863
X:18283922-18283705
218
SCML2_HUMAN
244-316
73
0
-
-
1.9
ENST00000251900
9
ENSE00001692459
X:18278411-18278291
121
SCML2_HUMAN
317-357
41
0
-
-
1.10
ENST00000251900
10
ENSE00001801055
X:18276367-18276164
204
SCML2_HUMAN
357-425
69
0
-
-
1.11
ENST00000251900
11
ENSE00001720943
X:18275150-18274968
183
SCML2_HUMAN
425-486
62
0
-
-
1.12b
ENST00000251900
12b
ENSE00001776891
X:18266002-18265889
114
SCML2_HUMAN
486-524
39
0
-
-
1.13
ENST00000251900
13
ENSE00001632032
X:18264948-18264697
252
SCML2_HUMAN
524-608
85
0
-
-
1.14
ENST00000251900
14
ENSE00000666137
X:18260710-18260559
152
SCML2_HUMAN
608-658
51
0
-
-
1.15b
ENST00000251900
15b
ENSE00001765000
X:18259499-18257434
2066
SCML2_HUMAN
659-700
42
0
-
-
[
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2biva1 (A:32-138)
1b: SCOP_d2biva2 (A:139-243)
1c: SCOP_d2bivb1 (B:27-133)
1d: SCOP_d2bivb2 (B:140-243)
1e: SCOP_d2bivc1 (C:32-133)
1f: SCOP_d2bivc2 (C:153-243)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2biva1
A:32-138
1b
d2biva2
A:139-243
1c
d2bivb1
B:27-133
1d
d2bivb2
B:140-243
1e
d2bivc1
C:32-133
1f
d2bivc2
C:153-243
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2bivA02 (A:59-162)
1b: CATH_2bivC02 (C:59-162)
1c: CATH_2bivA01 (A:32-58,A:163-243)
1d: CATH_2bivC01 (C:32-58,C:163-243)
1e: CATH_2bivB01 (B:27-58,B:163-243)
1f: CATH_2bivB02 (B:59-162)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2bivA02
A:59-162
1b
2bivC02
C:59-162
1c
2bivA01
A:32-58,A:163-243
1d
2bivC01
C:32-58,C:163-243
1e
2bivB01
B:27-58,B:163-243
1f
2bivB02
B:59-162
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (116 KB)
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