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2BHY
Asym. Unit
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Asym.Unit (137 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE IN COMPLEX WITH TREHALOSE
Authors
:
J. Timmins, H. -K. S. Leiros, G. Leonard, I. Leiros, S. Mcsweeney
Date
:
20 Jan 05 (Deposition) - 31 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, D. Radiodurans, Trehalose, Alpha-Amylase, Protein- Carbohydrate Complex, Desiccation Resistance, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Timmins, H. -K. S. Leiros, G. Leonard, I. Leiros, S. Mcsweeney
Crystal Structure Of Maltooligosyltrehalose Trehalohydrolase From Deinococcus Radiodurans In Complex With Disaccharides
J. Mol. Biol. V. 347 949 2005
[
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
3a: MAGNESIUM ION (MGa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
5a: TREHALOSE (TREa)
5b: TREHALOSE (TREb)
5c: TREHALOSE (TREc)
5d: TREHALOSE (TREd)
5e: TREHALOSE (TREe)
5f: TREHALOSE (TREf)
5g: TREHALOSE (TREg)
6a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
6b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
5
TRE
7
Ligand/Ion
TREHALOSE
6
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:287 , ARG A:311 , TRE A:1608 , HOH A:2948 , HOH A:2950 , HOH A:2951 , HOH A:2952 , HOH A:2953 , HOH A:2954
BINDING SITE FOR RESIDUE GLC A1613
02
AC2
SOFTWARE
GLY A:375 , GLU A:376 , HIS A:378 , HOH A:2639 , HOH A:2955 , HOH A:2956 , HOH A:2957 , HOH A:2958
BINDING SITE FOR RESIDUE GLC A1614
03
AC3
SOFTWARE
ASP A:113 , ASP A:540 , HOH A:2241 , HOH A:2249 , HOH A:2253 , HOH A:2813
BINDING SITE FOR RESIDUE MG A1615
04
AC4
SOFTWARE
THR A:337 , LEU A:338 , GLY A:416 , VAL A:417 , GLU A:421 , GLN A:563 , HOH A:2584 , HOH A:2834 , HOH A:2842 , HOH A:2901 , HOH A:2903 , HOH A:2904 , HOH A:2910
BINDING SITE FOR RESIDUE TRS A1603
05
AC5
SOFTWARE
GLU A:148 , HIS A:412 , GLN A:413 , SER A:414 , ASP A:415 , GLY A:416 , VAL A:417 , HOH A:2671 , HOH A:2905 , HOH A:2906
BINDING SITE FOR RESIDUE TRS A1604
06
AC6
SOFTWARE
HIS A:310 , ASP A:328 , HIS A:332 , TYR A:345 , TRP A:371 , GLU A:376 , ASP A:400 , GLN A:401 , ASN A:404 , HOH A:2580 , HOH A:2602 , HOH A:2642 , HOH A:2907 , HOH A:2957
BINDING SITE FOR RESIDUE TRE A1605
07
AC7
SOFTWARE
ASN A:53 , VAL A:73 , GLY A:74 , PRO A:75 , ALA A:77 , VAL A:336 , THR A:337 , GLY A:340 , ARG A:350 , GLY A:351 , GLY A:352 , HOH A:2115 , HOH A:2586 , HOH A:2908 , HOH A:2909 , HOH A:2910 , HOH A:2911 , HOH A:2912 , HOH A:2913 , HOH A:2914 , HOH A:2915 , HOH A:2916
BINDING SITE FOR RESIDUE TRE A1606
08
AC8
SOFTWARE
HIS A:101 , PHE A:218 , GLY A:219 , PRO A:220 , SER A:221 , GLY A:222 , ASN A:223 , TRP A:241 , HOH A:2441 , HOH A:2917 , HOH A:2918 , HOH A:2919 , HOH A:2920 , HOH A:2921 , HOH A:2922
BINDING SITE FOR RESIDUE TRE A1607
09
AC9
SOFTWARE
ALA A:45 , ARG A:46 , PRO A:314 , ASP A:315 , HIS A:382 , GLC A:1613 , HOH A:2082 , HOH A:2084 , HOH A:2086 , HOH A:2923 , HOH A:2924 , HOH A:2925 , HOH A:2926 , HOH A:2927 , HOH A:2953
BINDING SITE FOR RESIDUE TRE A1608
10
BC1
SOFTWARE
PRO A:31 , GLY A:32 , GLU A:354 , ARG A:361 , GLY A:538 , HIS A:539 , HOH A:2858 , HOH A:2928 , HOH A:2929 , HOH A:2930 , HOH A:2931 , HOH A:2932 , HOH A:2935
BINDING SITE FOR RESIDUE TRE A1609
11
BC2
SOFTWARE
GLY A:121 , ILE A:122 , ASP A:126 , GLU A:285 , ARG A:522 , HOH A:2279 , HOH A:2281 , HOH A:2417 , HOH A:2520 , HOH A:2779 , HOH A:2795 , HOH A:2936 , HOH A:2937 , HOH A:2938 , HOH A:2939 , HOH A:2940
BINDING SITE FOR RESIDUE TRE A1610
12
BC3
SOFTWARE
THR A:17 , GLN A:18 , HIS A:528 , ASN A:529 , ARG A:530 , GLN A:531 , THR A:550 , GLY A:551 , ALA A:552 , HOH A:2124 , HOH A:2785 , HOH A:2798 , HOH A:2941 , HOH A:2942 , HOH A:2943 , HOH A:2944 , HOH A:2945 , HOH A:2946 , HOH A:2947
BINDING SITE FOR RESIDUE TRE A1611
13
BC4
SOFTWARE
THR A:327 , ASP A:328 , VAL A:393 , CYS A:395 , ASN A:398 , HOH A:2575
BINDING SITE FOR RESIDUE BME A1612
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2bhya2 (A:531-602)
2a: SCOP_d2bhya1 (A:14-110)
3a: SCOP_d2bhya3 (A:111-530)
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Folds
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Glycosyltrehalose trehalohydrolase
(17)
Deinococcus radiodurans [TaxId: 1299]
(9)
1a
d2bhya2
A:531-602
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Glycosyltrehalose trehalohydrolase, N-terminal domain N
(17)
Deinococcus radiodurans [TaxId: 1299]
(9)
2a
d2bhya1
A:14-110
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Glycosyltrehalose trehalohydrolase, central domain
(17)
Deinococcus radiodurans [TaxId: 1299]
(9)
3a
d2bhya3
A:111-530
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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