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2BHQ
Biol. Unit 1
Info
Asym.Unit (196 KB)
Biol.Unit 1 (568 KB)
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(1)
Title
:
CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND PRODUCT GLUTAMATE.
Authors
:
E. Inagaki, T. H. Tahirov
Date
:
16 Jan 05 (Deposition) - 09 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
1-Pyrroline-5-Carboxylate, Dehyrogenase, Oxidoreductase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Inagaki, N. Ohshima, H. Takahashi, C. Kuroishi, S. Yokoyama, T. H. Tahirov
Crystal Structure Of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase.
J. Mol. Biol. V. 362 490 2006
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Hetero Components
(4, 39)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
4c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
4d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
4e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
3
MPD
12
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MRD
15
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:462 , PHE A:464 , HIS A:465 , HOH A:2657 , HOH A:2658 , LYS B:510
BINDING SITE FOR RESIDUE ACT A1524
02
AC2
SOFTWARE
LYS A:510 , ARG B:462 , PHE B:464 , HIS B:465 , HOH B:2674 , HOH B:2675
BINDING SITE FOR RESIDUE ACT B1519
03
AC3
SOFTWARE
ASN A:184 , PHE A:185 , ILE A:189 , GLU A:288 , LYS A:321 , CYS A:322 , SER A:323 , THR A:476 , GLY A:477 , ALA A:478 , PHE A:485 , HOH A:2267 , HOH A:2268 , HOH A:2333 , HOH A:2601 , HOH A:2646
BINDING SITE FOR RESIDUE GLU A1517
04
AC4
SOFTWARE
ASN B:184 , PHE B:185 , ILE B:189 , GLU B:288 , LYS B:321 , CYS B:322 , SER B:323 , THR B:476 , GLY B:477 , ALA B:478 , PHE B:485 , HOH B:2298 , HOH B:2372 , HOH B:2627 , HOH B:2672 , HOH B:2673
BINDING SITE FOR RESIDUE GLU B1518
05
AC5
SOFTWARE
LEU A:275 , GLN A:279 , HOH A:2648 , HOH A:2649 , HOH A:2650
BINDING SITE FOR RESIDUE MRD A1518
06
AC6
SOFTWARE
ILE A:180 , GLU A:241 , GLY A:244 , ALA A:245 , HOH A:2358
BINDING SITE FOR RESIDUE MRD A1519
07
AC7
SOFTWARE
ARG A:151 , TYR A:171 , HOH A:2654 , HOH A:2655
BINDING SITE FOR RESIDUE MRD A1522
08
AC8
SOFTWARE
LEU B:275 , GLN B:279 , HOH B:2670 , HOH B:2671
BINDING SITE FOR RESIDUE MRD B1517
09
AC9
SOFTWARE
ILE B:180 , GLU B:241 , GLY B:244 , ALA B:245
BINDING SITE FOR RESIDUE MRD B1521
10
BC1
SOFTWARE
ARG A:36 , TRP A:46 , GLU A:221 , HOH A:2109
BINDING SITE FOR RESIDUE MPD A1520
11
BC2
SOFTWARE
PHE A:6 , TYR A:144 , ARG A:147 , ALA A:148 , HOH A:2284 , HOH A:2651 , HOH A:2652 , HOH A:2653 , GLU B:158
BINDING SITE FOR RESIDUE MPD A1521
12
BC3
SOFTWARE
SER A:374 , ILE A:378 , HOH A:2488 , HOH A:2656
BINDING SITE FOR RESIDUE MPD A1523
13
BC4
SOFTWARE
GLU A:158 , PHE B:6 , TYR B:144 , ARG B:147 , ALA B:148 , HOH B:2311 , HOH B:2676 , HOH B:2677 , HOH B:2678
BINDING SITE FOR RESIDUE MPD B1520
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bhqa_ (A:)
1b: SCOP_d2bhqb_ (B:)
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(
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
automated matches
(24)
Thermus thermophilus HB8 [TaxId: 300852]
(15)
1a
d2bhqa_
A:
1b
d2bhqb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2bhqA01 (A:1-289,A:480-516)
1b: CATH_2bhqB01 (B:1-289,B:480-516)
2a: CATH_2bhqA02 (A:290-479)
2b: CATH_2bhqB02 (B:290-479)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(8)
1a
2bhqA01
A:1-289,A:480-516
1b
2bhqB01
B:1-289,B:480-516
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(8)
2a
2bhqA02
A:290-479
2b
2bhqB02
B:290-479
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (196 KB)
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Header - Biol.Unit 1
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