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2BHP
Biol. Unit 1
Info
Asym.Unit (198 KB)
Biol.Unit 1 (568 KB)
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(1)
Title
:
CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND NAD.
Authors
:
E. Inagaki, T. H. Tahirov
Date
:
16 Jan 05 (Deposition) - 09 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
1-Pyrroline-5-Carboxylate, Dehyrogenase, Oxidoreductase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Inagaki, N. Ohshima, H. Takahashi, C. Kuroishi, S. Yokoyama, T. H. Tahirov
Crystal Structure Of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase.
J. Mol. Biol. V. 362 490 2006
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Hetero Components
(4, 51)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
3b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
3c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
3d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
3e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
3f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
15
Ligand/Ion
ACETATE ION
2
MPD
12
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
18
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAD
6
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:245 , GLU A:249 , ILE A:268 , ALA A:271 , NAD A:1517 , HOH A:2604
BINDING SITE FOR RESIDUE ACT A1518
02
AC2
SOFTWARE
ARG A:462 , PHE A:464 , HIS A:465 , HOH A:2605 , HOH A:2606 , LYS B:510
BINDING SITE FOR RESIDUE ACT A1519
03
AC3
SOFTWARE
ARG A:20 , ASN A:357 , HOH A:2444
BINDING SITE FOR RESIDUE ACT A1520
04
AC4
SOFTWARE
SER A:55 , LEU A:56 , GLU A:123 , ASP A:211 , HOH A:2150 , HOH A:2449
BINDING SITE FOR RESIDUE NA A1526
05
AC5
SOFTWARE
ALA B:245 , GLU B:249 , ILE B:268 , ALA B:271 , NAD B:1517 , HOH B:2581
BINDING SITE FOR RESIDUE ACT B1520
06
AC6
SOFTWARE
LYS A:510 , ARG B:462 , PHE B:464 , HIS B:465 , HOH B:2582 , HOH B:2583
BINDING SITE FOR RESIDUE ACT B1521
07
AC7
SOFTWARE
SER B:55 , LEU B:56 , GLU B:123 , ASP B:211 , HOH B:2143 , HOH B:2436
BINDING SITE FOR RESIDUE NA B1524
08
AC8
SOFTWARE
ILE A:180 , ALA A:181 , PRO A:182 , TRP A:183 , ASN A:184 , ILE A:189 , LYS A:207 , ALA A:209 , GLU A:210 , GLY A:240 , GLY A:244 , ALA A:245 , PHE A:258 , THR A:259 , GLY A:260 , SER A:261 , VAL A:264 , GLU A:288 , THR A:289 , GLY A:290 , CYS A:322 , GLU A:417 , PHE A:419 , LEU A:445 , PHE A:485 , ACT A:1518 , HOH A:2323 , HOH A:2345 , HOH A:2600 , HOH A:2601 , HOH A:2602 , HOH A:2603
BINDING SITE FOR RESIDUE NAD A1517
09
AC9
SOFTWARE
GLN A:279 , HOH A:2607 , HOH A:2608
BINDING SITE FOR RESIDUE MRD A1521
10
BC1
SOFTWARE
VAL A:312 , ASP A:359 , HOH A:2259 , HOH A:2610
BINDING SITE FOR RESIDUE MRD A1523
11
BC2
SOFTWARE
TYR B:171
BINDING SITE FOR RESIDUE MRD A1527
12
BC3
SOFTWARE
TYR A:144 , ALA A:148 , LEU A:500 , HOH A:2281 , HOH A:2612 , HOH A:2613 , GLU B:158
BINDING SITE FOR RESIDUE MRD A1528
13
BC4
SOFTWARE
ILE B:180 , ALA B:181 , PRO B:182 , TRP B:183 , ASN B:184 , ILE B:189 , LYS B:207 , ALA B:209 , GLU B:210 , GLY B:240 , GLY B:244 , ALA B:245 , PHE B:258 , THR B:259 , GLY B:260 , SER B:261 , VAL B:264 , GLU B:288 , THR B:289 , GLY B:290 , CYS B:322 , GLU B:417 , PHE B:419 , LEU B:445 , PHE B:485 , ACT B:1520 , HOH B:2311 , HOH B:2315 , HOH B:2573 , HOH B:2574 , HOH B:2575 , HOH B:2576 , HOH B:2577 , HOH B:2578
BINDING SITE FOR RESIDUE NAD B1517
14
BC5
SOFTWARE
ARG A:28 , TYR A:122 , PRO B:353 , GLU B:355 , GLU B:356 , HOH B:2584 , HOH B:2585
BINDING SITE FOR RESIDUE MRD B1523
15
BC6
SOFTWARE
GLN B:279 , HOH B:2586 , HOH B:2587
BINDING SITE FOR RESIDUE MRD B1527
16
BC7
SOFTWARE
ARG A:36 , TRP A:46 , GLU A:221 , HOH A:2111
BINDING SITE FOR RESIDUE MPD A1522
17
BC8
SOFTWARE
TYR A:375 , ILE A:378 , ARG A:412 , HOH A:2457 , HOH A:2461
BINDING SITE FOR RESIDUE MPD A1524
18
BC9
SOFTWARE
ARG A:151 , TYR A:171 , HOH A:2289 , HOH A:2611
BINDING SITE FOR RESIDUE MPD A1525
19
CC1
SOFTWARE
GLU A:158 , HOH A:2303 , PHE B:6 , TYR B:144 , ARG B:147 , ALA B:148 , HOH B:2262 , HOH B:2579 , HOH B:2580
BINDING SITE FOR RESIDUE MPD B1518
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bhpa_ (A:)
1b: SCOP_d2bhpb_ (B:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
automated matches
(24)
Thermus thermophilus HB8 [TaxId: 300852]
(15)
1a
d2bhpa_
A:
1b
d2bhpb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2bhpA01 (A:1-289,A:480-516)
1b: CATH_2bhpB01 (B:1-289,B:480-516)
2a: CATH_2bhpA02 (A:290-479)
2b: CATH_2bhpB02 (B:290-479)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(8)
1a
2bhpA01
A:1-289,A:480-516
1b
2bhpB01
B:1-289,B:480-516
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(8)
2a
2bhpA02
A:290-479
2b
2bhpB02
B:290-479
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Pfam Domains
(0, 0)
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