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2BGJ
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (47 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2.1 ANGSTROMS
Authors
:
J. I. Perez-Dorado, J. A. Hermoso, I. Nogues, S. Frago, C. Bittel, S. G. Mayhew, C. Gomez-Moreno, M. Medina, N. Cortez, N. Carrillo
Date
:
23 Dec 04 (Deposition) - 07 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Ferredoxin(Flavodoxin)-Nadp(H) Reductase, Flavoproteins, Electron Transfer, Rhodobacter Capsulatus, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Nogues, J. I. Perez-Dorado, S. Frago, C. Bittel, S. G. Mayhew, C. Gomez-Moreno, J. A. Hermoso, M. Medina, N. Cortez, N. Carrillo
The Ferredoxin-Nadp(H) Reductase From Rhodobacter Capsulatus: Molecular Structure And Catalytic Mechanism
Biochemistry V. 44 11730 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:49 , ARG A:64 , ALA A:65 , TYR A:66 , SER A:67 , TYR A:80 , SER A:81 , ILE A:82 , VAL A:84 , GLY A:87 , PRO A:88 , LEU A:89 , THR A:90 , THR A:130 , ALA A:133 , LYS A:265 , ALA A:266 , PHE A:267 , GLY A:271 , ILE A:272 , HOH A:2021 , HOH A:2028 , HOH A:2040 , HOH A:2085 , HOH A:2086 , HOH A:2090 , HOH A:2091
BINDING SITE FOR RESIDUE FAD A1273
2
AC2
SOFTWARE
PHE B:49 , ARG B:64 , ALA B:65 , TYR B:66 , SER B:67 , TYR B:80 , SER B:81 , ILE B:82 , GLY B:87 , PRO B:88 , LEU B:89 , THR B:90 , THR B:130 , ALA B:133 , LYS B:265 , ALA B:266 , PHE B:267 , VAL B:268 , GLU B:270 , GLY B:271 , ILE B:272 , HOH B:2082 , HOH B:2083 , HOH B:2085
BINDING SITE FOR RESIDUE FAD B1273
3
AC3
SOFTWARE
ARG C:64 , ALA C:65 , TYR C:66 , SER C:67 , TYR C:80 , SER C:81 , ILE C:82 , VAL C:84 , GLY C:87 , PRO C:88 , LEU C:89 , THR C:90 , THR C:130 , ALA C:133 , LYS C:265 , ALA C:266 , PHE C:267 , VAL C:268 , GLU C:270 , GLY C:271 , ILE C:272 , HOH C:2076 , HOH C:2077 , HOH C:2079 , HOH C:2080 , HOH C:2081
BINDING SITE FOR RESIDUE FAD C1273
4
AC4
SOFTWARE
ARG D:64 , ALA D:65 , TYR D:66 , SER D:67 , TYR D:80 , SER D:81 , ILE D:82 , GLY D:87 , PRO D:88 , LEU D:89 , THR D:90 , THR D:130 , ALA D:133 , LYS D:265 , ALA D:266 , PHE D:267 , VAL D:268 , GLU D:270 , GLY D:271 , ILE D:272 , HOH D:2018 , HOH D:2091 , HOH D:2092 , HOH D:2093 , HOH D:2094
BINDING SITE FOR RESIDUE FAD D1273
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2bgja1 (A:13-113)
1b: SCOP_d2bgjd1 (D:16-113)
1c: SCOP_d2bgjb1 (B:16-113)
1d: SCOP_d2bgjc1 (C:16-113)
2a: SCOP_d2bgja2 (A:114-272)
2b: SCOP_d2bgjd2 (D:114-272)
2c: SCOP_d2bgjb2 (B:114-272)
2d: SCOP_d2bgjc2 (C:114-272)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Rhodobacter capsulatus [TaxId: 1061]
(7)
1a
d2bgja1
A:13-113
1b
d2bgjd1
D:16-113
1c
d2bgjb1
B:16-113
1d
d2bgjc1
C:16-113
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Rhodobacter capsulatus [TaxId: 1061]
(7)
2a
d2bgja2
A:114-272
2b
d2bgjd2
D:114-272
2c
d2bgjb2
B:114-272
2d
d2bgjc2
C:114-272
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2bgjA02 (A:113-266)
1b: CATH_2bgjB02 (B:113-266)
1c: CATH_2bgjC02 (C:113-266)
1d: CATH_2bgjD02 (D:113-266)
2a: CATH_2bgjA01 (A:20-106)
2b: CATH_2bgjB01 (B:20-106)
2c: CATH_2bgjC01 (C:20-106)
2d: CATH_2bgjD01 (D:20-106)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4. Variant: dsm938.
(6)
1a
2bgjA02
A:113-266
1b
2bgjB02
B:113-266
1c
2bgjC02
C:113-266
1d
2bgjD02
D:113-266
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4. Variant: dsm938.
(6)
2a
2bgjA01
A:20-106
2b
2bgjB01
B:20-106
2c
2bgjC01
C:20-106
2d
2bgjD01
D:20-106
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (182 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (47 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (47 KB)
Header - Biol.Unit 4
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