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2BEX
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PLACENTAL RIBONUCLEASE INHIBITOR IN COMPLEX WITH HUMAN EOSINOPHIL DERIVED NEUROTOXIN AT 2A RESOLUTION
Authors
:
S. Iyer, D. E. Holloway, K. Kumar, R. Shapiro, K. R. Acharya
Date
:
01 Dec 04 (Deposition) - 17 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase/Inhibitor, Complex (Inhibitor/Nuclease), Ribonuclease Inhibitor, Eosinophil Derived Neurotoxin, Rnase 2, Luecine-Rich Repeats, Protein-Protein Interaction, Molecular Recognition, X-Ray Crystallography
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Iyer, D. E. Holloway, K. Kumar, R. Shapiro, K. R. Acharya
Molecular Recognition Of Human Eosinophil-Derived Neurotoxin (Rnase 2) By Placental Ribonuclease Inhibitor
J. Mol. Biol. V. 347 637 2005
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: ALPHA-KETOMALONIC ACID (MAKa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MAK
1
Ligand/Ion
ALPHA-KETOMALONIC ACID
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP B:263 , GLU B:264 , HOH B:2246 , ALA D:99
BINDING SITE FOR RESIDUE MAK B1461
2
AC2
SOFTWARE
SER A:105 , SER A:106 , ARG A:109 , LEU A:131 , GLU A:134 , ASN C:57
BINDING SITE FOR RESIDUE GOL A1461
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059820 (H73Q, chain C/D, )
2: VAR_013150 (H129N, chain C/D, )
3: VAR_014726 (P169L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059820
H
100
Q
RNAS2_HUMAN
Polymorphism
8012891
C/D
H
73
Q
2
UniProt
VAR_013150
H
156
N
RNAS2_HUMAN
Polymorphism
146887874
C/D
H
129
N
3
UniProt
VAR_014726
P
170
L
RINI_HUMAN
Polymorphism
17585
A/B
P
169
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (C:37-43,D:37-43)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNAS2_HUMAN
64-70
2
C:37-43
D:37-43
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Exons
(10, 20)
Info
All Exons
Exon 1.2 (C:0-134 | D:0-134)
Exon 2.6d (A:5-33 | B:4-33)
Exon 2.7e (A:33-90 | B:33-90)
Exon 2.7g (A:90-147 | B:90-147)
Exon 2.7p (A:147-204 | B:147-204)
Exon 2.8b (A:204-261 | B:204-261)
Exon 2.9a (A:261-318 | B:261-318)
Exon 2.10 (A:318-375 | B:318-375)
Exon 2.11b (A:375-432 | B:375-432)
Exon 2.11j (A:432-460 | B:432-460)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/-
03: Boundary 2.4c/2.6d
04: Boundary 2.6d/2.7e
05: Boundary 2.7e/2.7g
06: Boundary 2.7g/2.7p
07: Boundary 2.7p/2.8b
08: Boundary 2.8b/2.9a
09: Boundary 2.9a/2.10
10: Boundary 2.10/2.11b
11: Boundary 2.11b/2.11j
12: Boundary 2.11j/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000304625
1
ENSE00001285128
chr14:
21423611-21423695
85
RNAS2_HUMAN
-
0
0
-
-
1.2
ENST00000304625
2
ENSE00001124161
chr14:
21423926-21424595
670
RNAS2_HUMAN
1-163
163
2
C:0-134
D:0-134
135
135
2.2b
ENST00000397615
2b
ENSE00002189970
chr11:
506800-506609
192
RINI_HUMAN
-
0
0
-
-
2.4c
ENST00000397615
4c
ENSE00001369908
chr11:
504996-504824
173
RINI_HUMAN
-
0
0
-
-
2.6d
ENST00000397615
6d
ENSE00002173795
chr11:
502249-502062
188
RINI_HUMAN
1-34
34
2
A:5-33
B:4-33
29
30
2.7e
ENST00000397615
7e
ENSE00000656253
chr11:
500654-500484
171
RINI_HUMAN
34-91
58
2
A:33-90
B:33-90
58
58
2.7g
ENST00000397615
7g
ENSE00000656254
chr11:
499999-499829
171
RINI_HUMAN
91-148
58
2
A:90-147
B:90-147
58
58
2.7p
ENST00000397615
7p
ENSE00000656255
chr11:
499185-499015
171
RINI_HUMAN
148-205
58
2
A:147-204
B:147-204
58
58
2.8b
ENST00000397615
8b
ENSE00000656256
chr11:
498933-498763
171
RINI_HUMAN
205-262
58
2
A:204-261
B:204-261
58
58
2.9a
ENST00000397615
9a
ENSE00000656258
chr11:
498627-498457
171
RINI_HUMAN
262-319
58
2
A:261-318
B:261-318
58
58
2.10
ENST00000397615
10
ENSE00000656259
chr11:
498141-497971
171
RINI_HUMAN
319-376
58
2
A:318-375
B:318-375
58
58
2.11b
ENST00000397615
11b
ENSE00000656260
chr11:
495053-494883
171
RINI_HUMAN
376-433
58
2
A:375-432
B:375-432
58
58
2.11j
ENST00000397615
11j
ENSE00001827718
chr11:
494778-494515
264
RINI_HUMAN
433-461
29
2
A:432-460
B:432-460
29
29
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2bexc_ (C:)
1b: SCOP_d2bexd_ (D:)
2a: SCOP_d2bexa_ (A:)
2b: SCOP_d2bexb_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Eosinophil-derived neurotoxin (EDN)
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2bexc_
C:
1b
d2bexd_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
RNI-like
(17)
Family
:
28-residue LRR
(9)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2bexa_
A:
2b
d2bexb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2bexA00 (A:5-460)
1b: CATH_2bexB00 (B:4-460)
2a: CATH_2bexC00 (C:0-134)
2b: CATH_2bexD00 (D:0-134)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
1a
2bexA00
A:5-460
1b
2bexB00
B:4-460
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Human (Homo sapiens)
(46)
2a
2bexC00
C:0-134
2b
2bexD00
D:0-134
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (195 KB)
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