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2BEM
Biol. Unit 2
Info
Asym.Unit (102 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SERRATIA MARCESCENS CHITIN-BINDING PROTEIN CBP21
Authors
:
G. Vaaje-Kolstad, D. R. Houston, V. G. H. Eijsink, D. M. F. Van Aalten
Date
:
26 Nov 04 (Deposition) - 08 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Chitin-Binding Protein, Chitin Degradation, Chitin-Binding, Fniii-Like Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Vaaje-Kolstad, D. R. Houston, V. G. H. Eijsink, D. M. F. Van Aalten
Crystal Structure And Binding Properties Of The Serratia Marcescens Chitin-Binding Protein Cbp21
J. Biol. Chem. V. 280 11313 2005
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
2a: SODIUM ION (NAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
NA
-1
Ligand/Ion
SODIUM ION
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC8 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
GLN B:48 , CYS B:49 , GLY B:50 , GLN B:53 , EDO B:1202 , HOH B:2232 , HOH B:2233 , HOH B:2234
BINDING SITE FOR RESIDUE SO4 B1204
02
AC3
SOFTWARE
ARG B:113 , HOH B:2235 , HOH B:2236
BINDING SITE FOR RESIDUE SO4 B1205
03
AC4
SOFTWARE
GLY B:170 , SER B:171 , HOH B:2238 , HOH B:2240 , HOH B:2241
BINDING SITE FOR RESIDUE SO4 B1206
04
AC6
SOFTWARE
LYS B:125 , ASN B:127 , HOH B:2143 , THR C:90 , THR C:92 , ARG C:93 , HOH C:2199
BINDING SITE FOR RESIDUE SO4 C1202
05
AC8
SOFTWARE
HIS A:28 , GLU A:60 , HIS A:114 , THR A:183 , ASN A:185 , HOH A:2224 , SER B:51 , EDO B:1202
BINDING SITE FOR RESIDUE EDO A1198
06
BC3
SOFTWARE
ASP A:129 , SER A:131 , GLN A:132 , HOH A:2230 , HOH A:2231 , ALA B:166 , HIS C:74
BINDING SITE FOR RESIDUE EDO A1202
07
BC5
SOFTWARE
LYS B:96 , LEU B:97 , ASN B:98 , HOH B:2118 , HOH B:2223 , LEU C:45 , ASN C:95
BINDING SITE FOR RESIDUE EDO B1198
08
BC6
SOFTWARE
SER A:51 , TYR A:54 , HOH A:2033 , HIS B:28 , GLU B:60 , HIS B:114 , THR B:183 , ASN B:185 , HOH B:2224 , HOH B:2225
BINDING SITE FOR RESIDUE EDO B1199
09
BC7
SOFTWARE
PRO B:66 , GLN B:67 , ARG B:113 , ARG B:136 , ALA B:155 , ALA B:156 , HOH B:2226
BINDING SITE FOR RESIDUE EDO B1200
10
BC8
SOFTWARE
SER A:81 , THR A:82 , PHE A:84 , ASN B:185 , HOH B:2227 , HOH B:2228 , HOH B:2229
BINDING SITE FOR RESIDUE EDO B1201
11
BC9
SOFTWARE
THR A:183 , EDO A:1198 , HOH A:2224 , GLY B:50 , SO4 B:1204 , HOH B:2088 , HOH B:2230
BINDING SITE FOR RESIDUE EDO B1202
12
CC1
SOFTWARE
TYR A:54 , HIS B:114 , SER B:115 , ASP B:182 , HOH B:2210
BINDING SITE FOR RESIDUE EDO B1203
13
CC2
SOFTWARE
PRO B:126 , ASN B:127 , GLN C:48 , GLN C:88 , SO4 C:1203 , HOH C:2080
BINDING SITE FOR RESIDUE EDO C1198
14
CC3
SOFTWARE
SER B:33 , THR B:107 , LYS C:42 , GLN C:53 , TYR C:54
BINDING SITE FOR RESIDUE EDO C1199
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2bema_ (A:)
1b: SCOP_d2bemb_ (B:)
1c: SCOP_d2bemc_ (C:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Chitin-binding protein CBP21
(3)
Serratia marcescens [TaxId: 615]
(3)
1a
d2bema_
A:
1b
d2bemb_
B:
1c
d2bemc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2bemA00 (A:28-197)
1b: CATH_2bemB00 (B:28-197)
1c: CATH_2bemC00 (C:28-197)
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Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Coagulation Factor XIII; Chain A, domain 1
(28)
Homologous Superfamily
:
chitin-binding protein cbp21
(2)
Serratia marcescens. Organism_taxid: 615. Strain: bjl200.
(2)
1a
2bemA00
A:28-197
1b
2bemB00
B:28-197
1c
2bemC00
C:28-197
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (102 KB)
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Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (34 KB)
Header - Biol.Unit 3
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