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2BE7
Biol. Unit 1
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Asym.Unit (206 KB)
Biol.Unit 1 (391 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE UNLIGANDED (T-STATE) ASPARTATE TRANSCARBAMOYLASE OF THE PSYCHROPHILIC BACTERIUM MORITELLA PROFUNDA
Authors
:
D. De Vos, S. N. Savvides, J. Van Beeumen
Date
:
23 Oct 05 (Deposition) - 31 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Atcase, Psychrophilic, Cold Adaptation, Transferase, Allosteric, Holoenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. De Vos, Y. Xu, P. Hulpiau, B. Vergauwen, J. J. Van Beeumen
Structural Investigation Of Cold Activity And Regulation Of Aspartate Carbamoyltransferase From The Extreme Psychrophilic Bacterium Moritella Profunda.
J. Mol. Biol. V. 365 379 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS D:108 , CYS D:113 , CYS D:137 , CYS D:140
BINDING SITE FOR RESIDUE ZN D 1108
2
AC2
SOFTWARE
CYS E:108 , CYS E:113 , CYS E:137 , CYS E:140
BINDING SITE FOR RESIDUE ZN E 1108
3
AC3
SOFTWARE
CYS F:108 , CYS F:113 , CYS F:137 , CYS F:140
BINDING SITE FOR RESIDUE ZN F 1108
4
AC4
SOFTWARE
SER A:53 , THR A:54 , ARG A:55 , THR A:56 , SER B:81
BINDING SITE FOR RESIDUE SO4 A 311
5
AC5
SOFTWARE
SER A:81 , SER C:53 , THR C:54 , ARG C:55 , THR C:56 , HOH C:313
BINDING SITE FOR RESIDUE SO4 C 311
6
AC6
SOFTWARE
SER B:53 , THR B:54 , ARG B:55 , THR B:56 , HOH B:320 , SER C:81
BINDING SITE FOR RESIDUE SO4 B 311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:49-56,B:49-56,C:49-56)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_VIBS2
49-56
6
A:49-56
B:49-56
C:49-56
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2be7d1 (D:12-99)
1b: SCOP_d2be7e1 (E:12-99)
1c: SCOP_d2be7f1 (F:15-99)
2a: SCOP_d2be7a1 (A:2-150)
2b: SCOP_d2be7a2 (A:151-310)
2c: SCOP_d2be7b1 (B:2-150)
2d: SCOP_d2be7b2 (B:151-310)
2e: SCOP_d2be7c1 (C:2-150)
2f: SCOP_d2be7c2 (C:151-310)
3a: SCOP_d2be7d2 (D:100-151)
3b: SCOP_d2be7e2 (E:100-151)
3c: SCOP_d2be7f2 (F:100-150)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase
(62)
Moritella profunda [TaxId: 111291]
(1)
1a
d2be7d1
D:12-99
1b
d2be7e1
E:12-99
1c
d2be7f1
F:15-99
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Moritella profunda [TaxId: 111291]
(1)
2a
d2be7a1
A:2-150
2b
d2be7a2
A:151-310
2c
d2be7b1
B:2-150
2d
d2be7b2
B:151-310
2e
d2be7c1
C:2-150
2f
d2be7c2
C:151-310
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Moritella profunda [TaxId: 111291]
(1)
3a
d2be7d2
D:100-151
3b
d2be7e2
E:100-151
3c
d2be7f2
F:100-150
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2be7E01 (E:12-99)
1b: CATH_2be7D01 (D:12-99)
1c: CATH_2be7F01 (F:15-99)
2a: CATH_2be7A02 (A:134-291)
2b: CATH_2be7B02 (B:134-291)
2c: CATH_2be7C02 (C:134-291)
2d: CATH_2be7A01 (A:2-133,A:292-310)
2e: CATH_2be7B01 (B:2-133,B:292-310)
2f: CATH_2be7C01 (C:2-133,C:292-310)
3a: CATH_2be7D02 (D:100-151)
3b: CATH_2be7E02 (E:100-151)
3c: CATH_2be7F02 (F:100-150)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.140, no name defined]
(53)
Moritella profunda. Organism_taxid: 111291.
(1)
1a
2be7E01
E:12-99
1b
2be7D01
D:12-99
1c
2be7F01
F:15-99
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Moritella profunda. Organism_taxid: 111291.
(1)
2a
2be7A02
A:134-291
2b
2be7B02
B:134-291
2c
2be7C02
C:134-291
2d
2be7A01
A:2-133,A:292-310
2e
2be7B01
B:2-133,B:292-310
2f
2be7C01
C:2-133,C:292-310
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.20, no name defined]
(53)
Moritella profunda. Organism_taxid: 111291.
(1)
3a
2be7D02
D:100-151
3b
2be7E02
E:100-151
3c
2be7F02
F:100-150
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Pfam Domains
(0, 0)
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all PFAM domains
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