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2BE4
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO DR.36843
Authors
:
G. E. Wesenberg, G. N. Phillips Jr. , B. W. Han, E. Bitto, C. A. Bingman, E Center For Eukaryotic Structural Genomics (Cesg)
Date
:
21 Oct 05 (Deposition) - 01 Nov 05 (Release) - 06 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dr. 36843, Bc083168, Calicium Binding, Ef-Hand Superfamily, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Bitto, C. A. Bingman, L. Bittova, R. O. Frederick, B. G. Fox, G. N. Phillips Jr.
X-Ray Structure Of Danio Rerio Secretagogin: A Hexa-Ef-Hand Calcium Sensor.
Proteins V. 76 477 2009
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 11)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:8-43|A:53-89|A:101-136|A:145-180...)
2: EF_HAND_1 (A:21-33|A:114-126|A:158-170|A:206-...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
SEGN_DANRE
8-43
53-89
101-136
145-180
193-228
237-272
6
A:8-43
A:53-89
A:101-136
A:145-180
A:193-228
A:237-272
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
SEGN_DANRE
21-33
114-126
158-170
206-218
250-262
5
A:21-33
A:114-126
A:158-170
A:206-218
A:250-262
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Exons
(11, 11)
Info
All Exons
Exon 1.1 (A:3-24)
Exon 1.2 (A:24-47)
Exon 1.3 (A:48-78)
Exon 1.4 (A:79-108)
Exon 1.5 (A:109-127)
Exon 1.6 (A:128-153)
Exon 1.7 (A:154-172)
Exon 1.8 (A:172-187)
Exon 1.9 (A:188-207)
Exon 1.10 (A:208-230)
Exon 1.11 (A:231-272)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSDART00000081649
1
ENSDARE00000591909
chr16:
7591269-7591115
155
SEGN_DANRE
1-24
24
1
A:3-24
22
1.2
ENSDART00000081649
2
ENSDARE00000591894
chr16:
7590988-7590918
71
SEGN_DANRE
24-47
24
1
A:24-47
24
1.3
ENSDART00000081649
3
ENSDARE00000591881
chr16:
7590114-7590022
93
SEGN_DANRE
48-78
31
1
A:48-78
31
1.4
ENSDART00000081649
4
ENSDARE00000591869
chr16:
7582425-7582336
90
SEGN_DANRE
79-108
30
1
A:79-108
30
1.5
ENSDART00000081649
5
ENSDARE00000591865
chr16:
7582258-7582202
57
SEGN_DANRE
109-127
19
1
A:109-127
19
1.6
ENSDART00000081649
6
ENSDARE00000591855
chr16:
7579700-7579623
78
SEGN_DANRE
128-153
26
1
A:128-153
26
1.7
ENSDART00000081649
7
ENSDARE00000591848
chr16:
7576718-7576663
56
SEGN_DANRE
154-172
19
1
A:154-172
19
1.8
ENSDART00000081649
8
ENSDARE00000591842
chr16:
7575820-7575775
46
SEGN_DANRE
172-187
16
1
A:172-187
16
1.9
ENSDART00000081649
9
ENSDARE00000591836
chr16:
7572866-7572807
60
SEGN_DANRE
188-207
20
1
A:188-207
20
1.10
ENSDART00000081649
10
ENSDARE00000591826
chr16:
7572650-7572582
69
SEGN_DANRE
208-230
23
1
A:208-230
23
1.11
ENSDART00000081649
11
ENSDARE00000591818
chr16:
7570886-7570047
840
SEGN_DANRE
231-272
42
1
A:231-272
42
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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