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2BDN
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MCP-1 BOUND TO A BLOCKING ANTIBODY, 11K2
Authors
:
P. A. Boriack-Sjodin, M. Rushe, C. Reid, M Jarpe, H Van Vlijmen, V. Bailly
Date
:
20 Oct 05 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (2x)
Keywords
:
Antibody-Antigen Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Reid, M. Rushe, M. Jarpe, H. Van Vlijmen, B. Dolinski, F. Qian, T. G. Cachero, H. Cuervo, M. Yanachkova, C. Nwankwo, X. Wang, N. Etienne, E. Garber, V. Bailly, A. De Fougerolles, P. A. Boriack-Sjodin
Structure Activity Relationships Of Monocyte Chemoattractant Proteins In Complex With A Blocking Antibody.
Protein Eng. Des. Sel. V. 19 317 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SMALL_CYTOKINES_CC (A:11-53)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CC
PS00472
Small cytokines (intercrine/chemokine) C-C subfamily signature.
CCL2_HUMAN
34-76
1
A:11-53
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Exons
(2, 2)
Info
All Exons
Exon 1.2 (A:4-42)
Exon 1.3 (A:42-71)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225831
1
ENSE00001161448
chr17:
32582313-32582444
132
CCL2_HUMAN
1-26
26
0
-
-
1.2
ENST00000225831
2
ENSE00000713589
chr17:
32583241-32583358
118
CCL2_HUMAN
26-65
40
1
A:4-42
39
1.3
ENST00000225831
3
ENSE00001161442
chr17:
32583741-32584222
482
CCL2_HUMAN
65-99
35
1
A:42-71
30
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2bdnh2 (H:118-217)
2a: SCOP_d2bdnh1 (H:1-117)
3a: SCOP_d2bdna1 (A:4-71)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d2bdnh2
H:118-217
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(31)
2a
d2bdnh1
H:1-117
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
Monocyte chemoattractant protein-1 (MCP-1, MCAF)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
3a
d2bdna1
A:4-71
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_2bdnA00 (A:4-71)
2a: CATH_2bdnL02 (L:109-211)
2b: CATH_2bdnH01 (H:1-117)
2c: CATH_2bdnL01 (L:1-108)
2d: CATH_2bdnH02 (H:118-214)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
[unclassified]
(41)
1a
2bdnA00
A:4-71
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
2bdnL02
L:109-211
2b
2bdnH01
H:1-117
2c
2bdnL01
L:1-108
2d
2bdnH02
H:118-214
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Pfam Domains
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Asymmetric Unit 1
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