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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2BDL
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
CATHEPSIN K COMPLEXED WITH A PYRROLIDINE KETOAMIDE-BASED INHIBITOR
Authors
:
L. M. Shewchuk
Date
:
20 Oct 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cathepsin, Cysteine Protease, Catk, Cato, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. G. Barrett, J. G. Catalano, D. N. Deaton, A. M. Hassell, S. T. Long, A. B. Miller, L. R. Miller, J. A. Ray, V. Samano, L. M. Shewchuk, K. J. Wells-Knecht, D. H. Willard Jr. , L. L. Wright
Novel, Potent P2-P3 Pyrrolidine Derivatives Of Ketoamide-Based Cathepsin K Inhibitors.
Bioorg. Med. Chem. Lett. V. 16 1735 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (3S)-1-{[(3,5-DIMETHYLISOXAZOL-4-Y... (4PRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4PR
1
Ligand/Ion
(3S)-1-{[(3,5-DIMETHYLISOXAZOL-4-YL)AMINO]CARBONYL}-4,4-DIMETHYLPYRROLIDIN-3-YL{(1S)-1-[1-HYDROXY-2-OXO-2-{[(1R)-1-PHENYLETHYL]AMINO}ETHYL]PENTYL}CARBAMATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:19 , CYS A:22 , GLY A:23 , SER A:24 , CYS A:25 , TRP A:26 , GLY A:65 , GLY A:66 , LEU A:160 , ASN A:161 , HIS A:162 , GLY A:174 , TRP A:184 , HOH A:478 , HOH A:480 , HOH A:481
BINDING SITE FOR RESIDUE 4PR A 301
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006725 (G32R, chain A, )
2: VAR_015739 (A163V, chain A, )
3: VAR_006726 (L195P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006725
G
146
R
CATK_HUMAN
Disease (PKND)
---
A
G
32
R
2
UniProt
VAR_015739
A
277
V
CATK_HUMAN
Disease (PKND)
---
A
A
163
V
3
UniProt
VAR_006726
L
309
P
CATK_HUMAN
Disease (PKND)
29001685
A
L
195
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:19-30)
2: THIOL_PROTEASE_HIS (A:160-170)
3: THIOL_PROTEASE_ASN (A:177-196)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATK_HUMAN
133-144
1
A:19-30
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATK_HUMAN
274-284
1
A:160-170
3
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATK_HUMAN
291-310
1
A:177-196
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Exons
(5, 5)
Info
All Exons
Exon 1.5 (A:1-19)
Exon 1.6b (A:20-92)
Exon 1.7 (A:93-148)
Exon 1.8 (A:148-183)
Exon 1.9 (A:183-215)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6b
3: Boundary 1.6b/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000271651
1
ENSE00001343333
chr1:
150780799-150780690
110
CATK_HUMAN
-
0
0
-
-
1.3a
ENST00000271651
3a
ENSE00001691906
chr1:
150779282-150779162
121
CATK_HUMAN
1-40
40
0
-
-
1.4
ENST00000271651
4
ENSE00001044450
chr1:
150778700-150778578
123
CATK_HUMAN
41-81
41
0
-
-
1.5
ENST00000271651
5
ENSE00001044471
chr1:
150778492-150778337
156
CATK_HUMAN
82-133
52
1
A:1-19
19
1.6b
ENST00000271651
6b
ENSE00002193797
chr1:
150776715-150776497
219
CATK_HUMAN
134-206
73
1
A:20-92
73
1.7
ENST00000271651
7
ENSE00001610479
chr1:
150772185-150772020
166
CATK_HUMAN
207-262
56
1
A:93-148
56
1.8
ENST00000271651
8
ENSE00001602868
chr1:
150771749-150771644
106
CATK_HUMAN
262-297
36
1
A:148-183
36
1.9
ENST00000271651
9
ENSE00000959757
chr1:
150769374-150768684
691
CATK_HUMAN
297-329
33
1
A:183-215
33
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2bdla_ (A:)
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(
)
(
)
Folds
(
)
(
)
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)
(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
(Pro)cathepsin K
(41)
Human (Homo sapiens) [TaxId: 9606]
(40)
1a
d2bdla_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2bdlA00 (A:1-215)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
2bdlA00
A:1-215
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (43 KB)
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