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2BC9
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL-STRUCTURE OF THE N-TERMINAL LARGE GTPASE DOMAIN OF HUMAN GUANYLATE BINDING PROTEIN 1 (HGBP1) IN COMPLEX WITH NON-HYDROLYSABLE GTP ANALOGUE GPPNHP
Authors
:
A. Ghosh, G. J. K. Praefcke, L. Renault, A. Wittinghofer, C Herrmann
Date
:
19 Oct 05 (Deposition) - 07 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Protein- Guanine Nucleotide Complex, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ghosh, G. J. Praefcke, L. Renault, A. Wittinghofer, C. Herrmann
How Guanylate-Binding Proteins Achieve Assembly-Stimulated Processive Cleavage Of Gtp To Gmp.
Nature V. 440 101 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:52 , THR A:75 , GNP A:593 , HOH A:631 , HOH A:632
BINDING SITE FOR RESIDUE MG A 595
2
AC2
SOFTWARE
TYR A:47 , ARG A:48 , THR A:49 , GLY A:50 , LYS A:51 , SER A:52 , TYR A:53 , LEU A:67 , GLY A:68 , SER A:69 , HIS A:74 , THR A:75 , GLY A:100 , ARG A:183 , ASP A:184 , SER A:186 , PRO A:241 , LEU A:247 , ALA A:248 , LEU A:250 , MG A:595 , HOH A:605 , HOH A:609 , HOH A:612 , HOH A:631 , HOH A:632
BINDING SITE FOR RESIDUE GNP A 593
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033950 (I78V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033950
I
78
V
GBP1_HUMAN
Polymorphism
1048401
A
I
78
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_GB1_RHD3 (A:35-278)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_GB1_RHD3
PS51715
GB1/RHD3-type guanine nucleotide-binding (G) domain profile.
GBP1_HUMAN
35-278
1
A:35-278
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Exons
(6, 6)
Info
All Exons
Exon 1.2a (A:2-64)
Exon 1.5a (A:64-106)
Exon 1.6b (A:107-143)
Exon 1.6e (A:143-211 (gaps))
Exon 1.7 (A:211-292)
Exon 1.8a (A:292-308)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.5a
3: Boundary 1.5a/1.6b
4: Boundary 1.6b/1.6e
5: Boundary 1.6e/1.7
6: Boundary 1.7/1.8a
7: Boundary 1.8a/1.9a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370473
1a
ENSE00001452810
chr1:
89531043-89530843
201
GBP1_HUMAN
-
0
0
-
-
1.2a
ENST00000370473
2a
ENSE00001452808
chr1:
89528936-89528728
209
GBP1_HUMAN
1-64
64
1
A:2-64
63
1.5a
ENST00000370473
5a
ENSE00001676167
chr1:
89526007-89525880
128
GBP1_HUMAN
64-106
43
1
A:64-106
43
1.6b
ENST00000370473
6b
ENSE00001681134
chr1:
89525109-89525000
110
GBP1_HUMAN
107-143
37
1
A:107-143
37
1.6e
ENST00000370473
6e
ENSE00000776340
chr1:
89524726-89524524
203
GBP1_HUMAN
143-211
69
1
A:143-211 (gaps)
69
1.7
ENST00000370473
7
ENSE00001753781
chr1:
89523917-89523675
243
GBP1_HUMAN
211-292
82
1
A:211-292
82
1.8a
ENST00000370473
8a
ENSE00001797851
chr1:
89522817-89522537
281
GBP1_HUMAN
292-385
94
1
A:292-308
17
1.9a
ENST00000370473
9a
ENSE00001650939
chr1:
89521911-89521699
213
GBP1_HUMAN
386-456
71
0
-
-
1.10c
ENST00000370473
10c
ENSE00001675983
chr1:
89520898-89520796
103
GBP1_HUMAN
457-491
35
0
-
-
1.10e
ENST00000370473
10e
ENSE00001654998
chr1:
89520558-89520365
194
GBP1_HUMAN
491-555
65
0
-
-
1.11d
ENST00000370473
11d
ENSE00001883245
chr1:
89519151-89518002
1150
GBP1_HUMAN
556-592
37
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2bc9a2 (A:284-308)
2a: SCOP_d2bc9a1 (A:2-283)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
(5)
Superfamily
:
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
(5)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2bc9a2
A:284-308
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
2a
d2bc9a1
A:2-283
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2bc9A00 (A:2-308)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2bc9A00
A:2-308
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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