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Getting 'Exon' information from database.
2BBS
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
HUMAN DELTAF508 NBD1 WITH THREE SOLUBILIZING MUTATIONS
Authors
:
H. A. Lewis, M. C. Kearins, K. Conners, X. Zhao, F. Lu, J. M. Sauder, S. Emtage
Date
:
17 Oct 05 (Deposition) - 01 Nov 05 (Release) - 16 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Atp Binding Cassette, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Lewis, C. Wang, X. Zhao, Y. Hamuro, K. Conners, M. C. Kearins, F. Lu, J. M. Sauder, K. S. Molnar, S. J. Coales, P. C. Maloney, W. B. Guggino, D. R. Wetmore, P. C. Weber, J. F. Hunt
Structure And Dynamics Of Nbd1 From Cftr Characterized Using Crystallography And Hydrogen/Deuterium Exchange Mass Spectrometry.
J. Mol. Biol. V. 396 406 2010
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:1 , HOH A:7 , HOH A:202 , THR A:465 , GLN A:493
BINDING SITE FOR RESIDUE MG A 3
2
AC2
SOFTWARE
ATP B:2 , HOH B:8 , HOH B:203 , THR B:465 , GLN B:493
BINDING SITE FOR RESIDUE MG B 4
3
AC3
SOFTWARE
MG A:3 , HOH A:7 , HOH A:28 , HOH A:88 , HOH A:130 , HOH A:141 , HOH A:202 , HOH A:224 , HOH A:240 , HOH A:254 , TRP A:401 , VAL A:440 , THR A:460 , GLY A:461 , ALA A:462 , GLY A:463 , LYS A:464 , THR A:465 , SER A:466 , GLN A:493 , HOH B:65 , HOH B:140 , ASN B:597
BINDING SITE FOR RESIDUE ATP A 1
4
AC4
SOFTWARE
HOH A:93 , ASN A:597 , MG B:4 , HOH B:8 , HOH B:203 , HOH B:259 , TRP B:401 , VAL B:440 , GLY B:461 , ALA B:462 , GLY B:463 , LYS B:464 , THR B:465 , SER B:466 , GLN B:493
BINDING SITE FOR RESIDUE ATP B 2
[
close Site info
]
SAPs(SNPs)/Variants
(53, 105)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000160 (A455E, chain A/B, )
02: VAR_000161 (V456F, chain A/B, )
03: VAR_000162 (G458V, chain A/B, )
04: VAR_000163 (L467F, chain A/B, )
05: VAR_000164 (M470M, chain A/B, )
06: VAR_000165 (G480C, chain A/B, )
07: VAR_000166 (S492F, chain A/B, )
08: VAR_000167 (E504Q, chain A/B, )
09: VAR_009901 (I506M, chain A/B, )
10: VAR_000168 (I506V, chain A/B, )
11: VAR_000169 (I507V, chain A/B, )
12: VAR_000173 (D513G, chain A/B, )
13: VAR_000174 (V520F, chain A/B, )
14: VAR_048150 (K532E, chain A/B, )
15: VAR_000177 (S549I, chain A/B, )
16: VAR_000176 (S549N, chain A/B, )
17: VAR_000178 (S549R, chain A/B, )
18: VAR_000179 (G551D, chain A/B, )
19: VAR_000180 (G551S, chain A/B, )
20: VAR_000181 (R553Q, chain A/B, )
21: VAR_000182 (L558S, chain A/B, )
22: VAR_000183 (A559T, chain A/B, )
23: VAR_000184 (R560K, chain A/B, )
24: VAR_000185 (R560S, chain A/B, )
25: VAR_000186 (R560T, chain A/B, )
26: VAR_000187 (V562I, chain A/B, )
27: VAR_000188 (V562L, chain A/B, )
28: VAR_000189 (Y563N, chain A/B, )
29: VAR_000190 (Y569C, chain A/B, )
30: VAR_000191 (Y569D, chain A/B, )
31: VAR_000192 (Y569H, chain A/B, )
32: VAR_000193 (L571S, chain A/B, )
33: VAR_000194 (D572N, chain A/B, )
34: VAR_000195 (P574H, chain A/B, )
35: VAR_000196 (G576A, chain A/B, )
36: VAR_000197 (D579G, chain A/B, )
37: VAR_000198 (I601F, chain A/B, )
38: VAR_048151 (S605F, chain A/B, )
39: VAR_000199 (L610S, chain A/B, )
40: VAR_000200 (A613T, chain A/B, )
41: VAR_000201 (D614G, chain A/B, )
42: VAR_000202 (I618T, chain A/B, )
43: VAR_000203 (L619S, chain A/B, )
44: VAR_000204 (H620P, chain A/B, )
45: VAR_000205 (H620Q, chain A/B, )
46: VAR_000206 (G622D, chain A/B, )
47: VAR_000207 (G628R, chain A/B, )
48: VAR_000208 (L633P, chain A/B, )
49: VAR_000209 (D648V, chain B, )
50: VAR_000210 (D651N, chain A/B, )
51: VAR_009902 (S654G, chain A/B, )
52: VAR_000211 (T665S, chain A/B, )
53: VAR_000212 (R668C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000160
A
455
E
CFTR_HUMAN
Disease (CF)
---
A/B
A
455
E
02
UniProt
VAR_000161
V
456
F
CFTR_HUMAN
Disease (CF)
---
A/B
V
456
F
03
UniProt
VAR_000162
G
458
V
CFTR_HUMAN
Disease (CF)
---
A/B
G
458
V
04
UniProt
VAR_000163
L
467
F
CFTR_HUMAN
Polymorphism
1800089
A/B
L
467
F
05
UniProt
VAR_000164
V
470
M
CFTR_HUMAN
Polymorphism
213950
A/B
M
470
M
06
UniProt
VAR_000165
G
480
C
CFTR_HUMAN
Disease (CF)
---
A/B
G
480
C
07
UniProt
VAR_000166
S
492
F
CFTR_HUMAN
Disease (CF)
---
A/B
S
492
F
08
UniProt
VAR_000167
E
504
Q
CFTR_HUMAN
Disease (CF)
---
A/B
E
504
Q
09
UniProt
VAR_009901
I
506
M
CFTR_HUMAN
Polymorphism
1800092
A/B
I
506
M
10
UniProt
VAR_000168
I
506
V
CFTR_HUMAN
Polymorphism
---
A/B
I
506
V
11
UniProt
VAR_000169
I
507
V
CFTR_HUMAN
Polymorphism
1800091
A/B
I
507
V
12
UniProt
VAR_000173
D
513
G
CFTR_HUMAN
Disease (CBAVD)
---
A/B
D
513
G
13
UniProt
VAR_000174
V
520
F
CFTR_HUMAN
Disease (CF)
77646904
A/B
V
520
F
14
UniProt
VAR_048150
K
532
E
CFTR_HUMAN
Polymorphism
35032490
A/B
K
532
E
15
UniProt
VAR_000177
S
549
I
CFTR_HUMAN
Disease (CF)
---
A/B
S
549
I
16
UniProt
VAR_000176
S
549
N
CFTR_HUMAN
Disease (CF)
---
A/B
S
549
N
17
UniProt
VAR_000178
S
549
R
CFTR_HUMAN
Disease (CF)
---
A/B
S
549
R
18
UniProt
VAR_000179
G
551
D
CFTR_HUMAN
Disease (CF)
---
A/B
G
551
D
19
UniProt
VAR_000180
G
551
S
CFTR_HUMAN
Disease (CF)
---
A/B
G
551
S
20
UniProt
VAR_000181
R
553
Q
CFTR_HUMAN
Disease (CF)
---
A/B
R
553
Q
21
UniProt
VAR_000182
L
558
S
CFTR_HUMAN
Disease (CF)
---
A/B
L
558
S
22
UniProt
VAR_000183
A
559
T
CFTR_HUMAN
Disease (CF)
---
A/B
A
559
T
23
UniProt
VAR_000184
R
560
K
CFTR_HUMAN
Disease (CF)
---
A/B
R
560
K
24
UniProt
VAR_000185
R
560
S
CFTR_HUMAN
Disease (CF)
---
A/B
R
560
S
25
UniProt
VAR_000186
R
560
T
CFTR_HUMAN
Disease (CF)
---
A/B
R
560
T
26
UniProt
VAR_000187
V
562
I
CFTR_HUMAN
Polymorphism
1800097
A/B
V
562
I
27
UniProt
VAR_000188
V
562
L
CFTR_HUMAN
Disease (CF)
1800097
A/B
V
562
L
28
UniProt
VAR_000189
Y
563
N
CFTR_HUMAN
Disease (CF)
---
A/B
Y
563
N
29
UniProt
VAR_000190
Y
569
C
CFTR_HUMAN
Disease (CF)
---
A/B
Y
569
C
30
UniProt
VAR_000191
Y
569
D
CFTR_HUMAN
Disease (CF)
---
A/B
Y
569
D
31
UniProt
VAR_000192
Y
569
H
CFTR_HUMAN
Disease (CF)
---
A/B
Y
569
H
32
UniProt
VAR_000193
L
571
S
CFTR_HUMAN
Disease (CF)
---
A/B
L
571
S
33
UniProt
VAR_000194
D
572
N
CFTR_HUMAN
Disease (CF)
---
A/B
D
572
N
34
UniProt
VAR_000195
P
574
H
CFTR_HUMAN
Disease (CF)
---
A/B
P
574
H
35
UniProt
VAR_000196
G
576
A
CFTR_HUMAN
Polymorphism
1800098
A/B
G
576
A
36
UniProt
VAR_000197
D
579
G
CFTR_HUMAN
Disease (CF)
---
A/B
D
579
G
37
UniProt
VAR_000198
I
601
F
CFTR_HUMAN
Disease (CF)
---
A/B
I
601
F
38
UniProt
VAR_048151
S
605
F
CFTR_HUMAN
Polymorphism
766874
A/B
S
605
F
39
UniProt
VAR_000199
L
610
S
CFTR_HUMAN
Disease (CF)
---
A/B
L
610
S
40
UniProt
VAR_000200
A
613
T
CFTR_HUMAN
Disease (CF)
201978662
A/B
A
613
T
41
UniProt
VAR_000201
D
614
G
CFTR_HUMAN
Disease (CF)
201124247
A/B
D
614
G
42
UniProt
VAR_000202
I
618
T
CFTR_HUMAN
Disease (CF)
---
A/B
I
618
T
43
UniProt
VAR_000203
L
619
S
CFTR_HUMAN
Disease (CF)
---
A/B
L
619
S
44
UniProt
VAR_000204
H
620
P
CFTR_HUMAN
Disease (CF)
---
A/B
H
620
P
45
UniProt
VAR_000205
H
620
Q
CFTR_HUMAN
Disease (CF)
---
A/B
H
620
Q
46
UniProt
VAR_000206
G
622
D
CFTR_HUMAN
Unclassified
---
A/B
G
622
D
47
UniProt
VAR_000207
G
628
R
CFTR_HUMAN
Disease (CF)
---
A/B
G
628
R
48
UniProt
VAR_000208
L
633
P
CFTR_HUMAN
Disease (CF)
---
A/B
L
633
P
49
UniProt
VAR_000209
D
648
V
CFTR_HUMAN
Disease (CF)
---
B
D
648
V
50
UniProt
VAR_000210
D
651
N
CFTR_HUMAN
Disease (CF)
---
A/B
D
651
N
51
UniProt
VAR_009902
S
654
G
CFTR_HUMAN
Polymorphism
1800099
A/B
S
654
G
52
UniProt
VAR_000211
T
665
S
CFTR_HUMAN
Disease (CF)
---
A/B
T
665
S
53
UniProt
VAR_000212
R
668
C
CFTR_HUMAN
Polymorphism
1800100
A/B
R
668
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:548-562,B:548-562)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
CFTR_HUMAN
548-562
2
A:548-562
B:548-562
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.11 (A:388-403 | B:389-401)
Exon 1.12 (A:404-464 (gaps) | B:440-464)
Exon 1.13a (A:465-528 (gaps) | B:465-528 (gaps...)
Exon 1.15b (A:529-560 (gaps) | B:529-560 (gaps...)
Exon 1.16 (A:560-589 | B:560-589)
Exon 1.17 (A:589-671 (gaps) | B:589-670 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13a
4: Boundary 1.13a/1.15b
5: Boundary 1.15b/1.16
6: Boundary 1.16/1.17
7: Boundary 1.17/1.18
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000003084
3a
ENSE00001343851
chr7:
117120017-117120201
185
CFTR_HUMAN
1-18
18
0
-
-
1.4
ENST00000003084
4
ENSE00001708957
chr7:
117144307-117144417
111
CFTR_HUMAN
18-55
38
0
-
-
1.5
ENST00000003084
5
ENSE00001778965
chr7:
117149088-117149196
109
CFTR_HUMAN
55-91
37
0
-
-
1.6b
ENST00000003084
6b
ENSE00000718611
chr7:
117170953-117171168
216
CFTR_HUMAN
92-163
72
0
-
-
1.7
ENST00000003084
7
ENSE00000718620
chr7:
117174330-117174419
90
CFTR_HUMAN
164-193
30
0
-
-
1.8
ENST00000003084
8
ENSE00000718626
chr7:
117175302-117175465
164
CFTR_HUMAN
194-248
55
0
-
-
1.9
ENST00000003084
9
ENSE00000718630
chr7:
117176602-117176727
126
CFTR_HUMAN
248-290
43
0
-
-
1.10
ENST00000003084
10
ENSE00000718634
chr7:
117180154-117180400
247
CFTR_HUMAN
290-372
83
0
-
-
1.11
ENST00000003084
11
ENSE00000718637
chr7:
117182070-117182162
93
CFTR_HUMAN
373-403
31
2
A:388-403
B:389-401
16
13
1.12
ENST00000003084
12
ENSE00001738590
chr7:
117188695-117188877
183
CFTR_HUMAN
404-464
61
2
A:404-464 (gaps)
B:440-464
61
25
1.13a
ENST00000003084
13a
ENSE00000718648
chr7:
117199518-117199709
192
CFTR_HUMAN
465-528
64
2
A:465-528 (gaps)
B:465-528 (gaps)
64
64
1.15b
ENST00000003084
15b
ENSE00000718654
chr7:
117227793-117227887
95
CFTR_HUMAN
529-560
32
2
A:529-560 (gaps)
B:529-560 (gaps)
32
32
1.16
ENST00000003084
16
ENSE00000718660
chr7:
117230407-117230493
87
CFTR_HUMAN
560-589
30
2
A:560-589
B:560-589
30
30
1.17
ENST00000003084
17
ENSE00000718666
chr7:
117231988-117232711
724
CFTR_HUMAN
589-830
242
2
A:589-671 (gaps)
B:589-670 (gaps)
83
82
1.18
ENST00000003084
18
ENSE00000718674
chr7:
117234984-117235112
129
CFTR_HUMAN
831-873
43
0
-
-
1.19
ENST00000003084
19
ENSE00001015963
chr7:
117242880-117242917
38
CFTR_HUMAN
874-886
13
0
-
-
1.20
ENST00000003084
20
ENSE00000977441
chr7:
117243586-117243836
251
CFTR_HUMAN
886-970
85
0
-
-
1.21
ENST00000003084
21
ENSE00000977442
chr7:
117246728-117246807
80
CFTR_HUMAN
970-996
27
0
-
-
1.22
ENST00000003084
22
ENSE00000718690
chr7:
117250573-117250723
151
CFTR_HUMAN
997-1047
51
0
-
-
1.23a
ENST00000003084
23a
ENSE00000977443
chr7:
117251635-117251862
228
CFTR_HUMAN
1047-1123
77
0
-
-
1.24
ENST00000003084
24
ENSE00000718699
chr7:
117254667-117254767
101
CFTR_HUMAN
1123-1156
34
0
-
-
1.25a
ENST00000003084
25a
ENSE00000718704
chr7:
117267576-117267824
249
CFTR_HUMAN
1157-1239
83
0
-
-
1.26
ENST00000003084
26
ENSE00000718708
chr7:
117282492-117282647
156
CFTR_HUMAN
1240-1291
52
0
-
-
1.27
ENST00000003084
27
ENSE00000718713
chr7:
117292896-117292985
90
CFTR_HUMAN
1292-1321
30
0
-
-
1.28
ENST00000003084
28
ENSE00000718718
chr7:
117304742-117304914
173
CFTR_HUMAN
1322-1379
58
0
-
-
1.29
ENST00000003084
29
ENSE00000718724
chr7:
117305513-117305618
106
CFTR_HUMAN
1379-1414
36
0
-
-
1.30b
ENST00000003084
30b
ENSE00001918100
chr7:
117306962-117308715
1754
CFTR_HUMAN
1415-1480
66
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bbsa_ (A:)
1b: SCOP_d2bbsb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2bbsa_
A:
1b
d2bbsb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
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1a: CATH_2bbsB00 (B:389-670)
1b: CATH_2bbsA00 (A:388-671)
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Class
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Alpha Beta
(26913)
Architecture
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3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2bbsB00
B:389-670
1b
2bbsA00
A:388-671
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