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2BAT
Biol. Unit 1
Info
Asym.Unit (77 KB)
Biol.Unit 1 (269 KB)
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(1)
Title
:
THE STRUCTURE OF THE COMPLEX BETWEEN INFLUENZA VIRUS NEURAMINIDASE AND SIALIC ACID, THE VIRAL RECEPTOR
Authors
:
J. N. Varghese, P. M. Colman
Date
:
10 Aug 92 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Hydrolase(O-Glycosyl)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. N. Varghese, J. L. Mckimm-Breschkin, J. B. Caldwell, A. A. Kortt, P. M. Colman
The Structure Of The Complex Between Influenza Virus Neuraminidase And Sialic Acid, The Viral Receptor.
Proteins V. 14 327 1992
(for further references see the
PDB file header
)
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Hetero Components
(6, 64)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
3a: BETA-L-FUCOSE (FULa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6a: 2-(ACETYLAMINO)-2-DEOXY-4-O-SULFO-... (NGKa)
7a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
8
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FUL
4
Ligand/Ion
BETA-L-FUCOSE
4
MAN
16
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
28
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NGK
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-4-O-SULFO-ALPHA-D-GALACTOPYRANOSE
7
SIA
4
Ligand/Ion
O-SIALIC ACID
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:83 , ASN A:86 , SER A:88 , TYR A:284 , NAG A:484A
BINDING SITE FOR RESIDUE NAG A 470A
02
AC2
SOFTWARE
ASN A:146 , TRP A:437 , NAG A:472B , FUL A:477I
BINDING SITE FOR RESIDUE NAG A 471A
03
AC3
SOFTWARE
NAG A:471A
BINDING SITE FOR RESIDUE NAG A 472B
04
AC4
SOFTWARE
GLU A:433 , THR A:434 , ARG A:435 , ASN A:465 , HOH A:603
BINDING SITE FOR RESIDUE NGK A 476F
05
AC5
SOFTWARE
ASN A:463 , NAG A:471A
BINDING SITE FOR RESIDUE FUL A 477I
06
AC6
SOFTWARE
ASN A:200 , TYR A:453 , GLY A:454 , THR A:455 , NAG A:479B , HOH A:680
BINDING SITE FOR RESIDUE NAG A 478A
07
AC7
SOFTWARE
ASN A:393 , ARG A:394 , NAG A:478A , BMA A:480C , MAN A:481D , HOH A:672
BINDING SITE FOR RESIDUE NAG A 479B
08
AC8
SOFTWARE
GLN A:391 , ILE A:392 , ASN A:393 , ARG A:394 , NAG A:479B , MAN A:481D , MAN A:482E , MAN A:483F
BINDING SITE FOR RESIDUE BMA A 480C
09
AC9
SOFTWARE
GLN A:391 , NAG A:479B , BMA A:480C , MAN A:482E , HOH A:665
BINDING SITE FOR RESIDUE MAN A 481D
10
BC1
SOFTWARE
BMA A:480C , MAN A:481D
BINDING SITE FOR RESIDUE MAN A 482E
11
BC2
SOFTWARE
BMA A:480C
BINDING SITE FOR RESIDUE MAN A 483F
12
BC3
SOFTWARE
ASN A:234 , TYR A:284 , NAG A:470A
BINDING SITE FOR RESIDUE NAG A 484A
13
BC4
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:699X
BINDING SITE FOR RESIDUE SIA A 600
14
BC5
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLN A:347
BINDING SITE FOR RESIDUE CA A 601
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2bata_ (A:)
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d2bata_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2batA00 (A:82-469)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus (a/tokyo/3/1967(h2n2)). Organism_taxid: 380960. Strain: a/tokyo/3/1967(h2n2)
(2)
1a
2batA00
A:82-469
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Protein
Nucleic
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Sidechain
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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Asym.Unit (77 KB)
Header - Asym.Unit
Biol.Unit 1 (269 KB)
Header - Biol.Unit 1
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