PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2B9V
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1 (414 KB)
Biol.Unit 2 (416 KB)
Biol.Unit 3 (413 KB)
Biol.Unit 4 (417 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ACETOBACTER TURBIDANS ALPHA-AMINO ACID ESTER HYDROLASE
Authors
:
T. R. M. Barends
Date
:
13 Oct 05 (Deposition) - 27 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Catalytic Triad, Alpha/Beta-Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. R. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. Williams, G. Wybenga, D. B. Janssen, B. W. Dijkstra
Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase: How A Single Mutation Improves An Antibiotic-Producing Enzyme.
J. Biol. Chem. V. 281 5804 2006
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 32)
Info
All SCOP Domains
1a: SCOP_d2b9va1 (A:435-666)
1b: SCOP_d2b9vb1 (B:435-666)
1c: SCOP_d2b9vk1 (K:435-666)
1d: SCOP_d2b9vl1 (L:435-666)
1e: SCOP_d2b9vm1 (M:435-666)
1f: SCOP_d2b9vn1 (N:435-666)
1g: SCOP_d2b9vo1 (O:435-666)
1h: SCOP_d2b9vp1 (P:435-666)
1i: SCOP_d2b9vc1 (C:435-666)
1j: SCOP_d2b9vd1 (D:435-666)
1k: SCOP_d2b9ve1 (E:435-666)
1l: SCOP_d2b9vf1 (F:435-666)
1m: SCOP_d2b9vg1 (G:435-666)
1n: SCOP_d2b9vh1 (H:435-666)
1o: SCOP_d2b9vi1 (I:435-666)
1p: SCOP_d2b9vj1 (J:435-666)
2a: SCOP_d2b9va2 (A:50-434)
2b: SCOP_d2b9vb2 (B:50-434)
2c: SCOP_d2b9vk2 (K:50-434)
2d: SCOP_d2b9vl2 (L:50-434)
2e: SCOP_d2b9vm2 (M:50-434)
2f: SCOP_d2b9vn2 (N:50-434)
2g: SCOP_d2b9vo2 (O:50-434)
2h: SCOP_d2b9vp2 (P:50-434)
2i: SCOP_d2b9vc2 (C:50-434)
2j: SCOP_d2b9vd2 (D:50-434)
2k: SCOP_d2b9ve2 (E:50-434)
2l: SCOP_d2b9vf2 (F:50-434)
2m: SCOP_d2b9vg2 (G:50-434)
2n: SCOP_d2b9vh2 (H:50-434)
2o: SCOP_d2b9vi2 (I:50-434)
2p: SCOP_d2b9vj2 (J:50-434)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PepX C-terminal domain-like
(10)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
1a
d2b9va1
A:435-666
1b
d2b9vb1
B:435-666
1c
d2b9vk1
K:435-666
1d
d2b9vl1
L:435-666
1e
d2b9vm1
M:435-666
1f
d2b9vn1
N:435-666
1g
d2b9vo1
O:435-666
1h
d2b9vp1
P:435-666
1i
d2b9vc1
C:435-666
1j
d2b9vd1
D:435-666
1k
d2b9ve1
E:435-666
1l
d2b9vf1
F:435-666
1m
d2b9vg1
G:435-666
1n
d2b9vh1
H:435-666
1o
d2b9vi1
I:435-666
1p
d2b9vj1
J:435-666
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
PepX catalytic domain-like
(19)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
2a
d2b9va2
A:50-434
2b
d2b9vb2
B:50-434
2c
d2b9vk2
K:50-434
2d
d2b9vl2
L:50-434
2e
d2b9vm2
M:50-434
2f
d2b9vn2
N:50-434
2g
d2b9vo2
O:50-434
2h
d2b9vp2
P:50-434
2i
d2b9vc2
C:50-434
2j
d2b9vd2
D:50-434
2k
d2b9ve2
E:50-434
2l
d2b9vf2
F:50-434
2m
d2b9vg2
G:50-434
2n
d2b9vh2
H:50-434
2o
d2b9vi2
I:50-434
2p
d2b9vj2
J:50-434
[
close SCOP info
]
CATH Domains
(3, 48)
Info
all CATH domains
1a: CATH_2b9vA01 (A:50-238,A:316-432)
1b: CATH_2b9vB01 (B:50-238,B:316-432)
1c: CATH_2b9vK01 (K:50-238,K:316-432)
1d: CATH_2b9vL01 (L:50-238,L:316-432)
1e: CATH_2b9vM01 (M:50-238,M:316-432)
1f: CATH_2b9vN01 (N:50-238,N:316-432)
1g: CATH_2b9vO01 (O:50-238,O:316-432)
1h: CATH_2b9vP01 (P:50-238,P:316-432)
1i: CATH_2b9vC01 (C:50-238,C:316-432)
1j: CATH_2b9vD01 (D:50-238,D:316-432)
1k: CATH_2b9vE01 (E:50-238,E:316-432)
1l: CATH_2b9vF01 (F:50-238,F:316-432)
1m: CATH_2b9vG01 (G:50-238,G:316-432)
1n: CATH_2b9vH01 (H:50-238,H:316-432)
1o: CATH_2b9vI01 (I:50-238,I:316-432)
1p: CATH_2b9vJ01 (J:50-238,J:316-432)
2a: CATH_2b9vA02 (A:240-315)
2b: CATH_2b9vB02 (B:240-315)
2c: CATH_2b9vK02 (K:240-315)
2d: CATH_2b9vL02 (L:240-315)
2e: CATH_2b9vM02 (M:240-315)
2f: CATH_2b9vN02 (N:240-315)
2g: CATH_2b9vO02 (O:240-315)
2h: CATH_2b9vP02 (P:240-315)
2i: CATH_2b9vC02 (C:240-315)
2j: CATH_2b9vD02 (D:240-315)
2k: CATH_2b9vE02 (E:240-315)
2l: CATH_2b9vF02 (F:240-315)
2m: CATH_2b9vG02 (G:240-315)
2n: CATH_2b9vH02 (H:240-315)
2o: CATH_2b9vI02 (I:240-315)
2p: CATH_2b9vJ02 (J:240-315)
3a: CATH_2b9vA03 (A:433-666)
3b: CATH_2b9vB03 (B:433-666)
3c: CATH_2b9vK03 (K:433-666)
3d: CATH_2b9vL03 (L:433-666)
3e: CATH_2b9vM03 (M:433-666)
3f: CATH_2b9vN03 (N:433-666)
3g: CATH_2b9vO03 (O:433-666)
3h: CATH_2b9vP03 (P:433-666)
3i: CATH_2b9vC03 (C:433-666)
3j: CATH_2b9vD03 (D:433-666)
3k: CATH_2b9vE03 (E:433-666)
3l: CATH_2b9vF03 (F:433-666)
3m: CATH_2b9vG03 (G:433-666)
3n: CATH_2b9vH03 (H:433-666)
3o: CATH_2b9vI03 (I:433-666)
3p: CATH_2b9vJ03 (J:433-666)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
1a
2b9vA01
A:50-238,A:316-432
1b
2b9vB01
B:50-238,B:316-432
1c
2b9vK01
K:50-238,K:316-432
1d
2b9vL01
L:50-238,L:316-432
1e
2b9vM01
M:50-238,M:316-432
1f
2b9vN01
N:50-238,N:316-432
1g
2b9vO01
O:50-238,O:316-432
1h
2b9vP01
P:50-238,P:316-432
1i
2b9vC01
C:50-238,C:316-432
1j
2b9vD01
D:50-238,D:316-432
1k
2b9vE01
E:50-238,E:316-432
1l
2b9vF01
F:50-238,F:316-432
1m
2b9vG01
G:50-238,G:316-432
1n
2b9vH01
H:50-238,H:316-432
1o
2b9vI01
I:50-238,I:316-432
1p
2b9vJ01
J:50-238,J:316-432
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Homologous Superfamily
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
2a
2b9vA02
A:240-315
2b
2b9vB02
B:240-315
2c
2b9vK02
K:240-315
2d
2b9vL02
L:240-315
2e
2b9vM02
M:240-315
2f
2b9vN02
N:240-315
2g
2b9vO02
O:240-315
2h
2b9vP02
P:240-315
2i
2b9vC02
C:240-315
2j
2b9vD02
D:240-315
2k
2b9vE02
E:240-315
2l
2b9vF02
F:240-315
2m
2b9vG02
G:240-315
2n
2b9vH02
H:240-315
2o
2b9vI02
I:240-315
2p
2b9vJ02
J:240-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
3a
2b9vA03
A:433-666
3b
2b9vB03
B:433-666
3c
2b9vK03
K:433-666
3d
2b9vL03
L:433-666
3e
2b9vM03
M:433-666
3f
2b9vN03
N:433-666
3g
2b9vO03
O:433-666
3h
2b9vP03
P:433-666
3i
2b9vC03
C:433-666
3j
2b9vD03
D:433-666
3k
2b9vE03
E:433-666
3l
2b9vF03
F:433-666
3m
2b9vG03
G:433-666
3n
2b9vH03
H:433-666
3o
2b9vI03
I:433-666
3p
2b9vJ03
J:433-666
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.6 MB)
Header - Asym.Unit
Biol.Unit 1 (414 KB)
Header - Biol.Unit 1
Biol.Unit 2 (416 KB)
Header - Biol.Unit 2
Biol.Unit 3 (413 KB)
Header - Biol.Unit 3
Biol.Unit 4 (417 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2B9V
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help