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2B96
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
THIRD CALCIUM ION FOUND IN AN INHIBITOR BOUND PHOSPHOLIPASE A2
Authors
:
K. Sekar, D. Velmurugan, T. Yamane, M. D. Tsai
Date
:
11 Oct 05 (Deposition) - 28 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha Helix, Beta Sheet, Triple Mutant, Anisic Acid, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Sekar, D. Gayathri, D. Velmurugan, J. Jeyakanthan, T. Yamane, M. J. Poi, M. D. Tsai
Third Calcium Ion Found In An Inhibitor Bound Phospholipase A2
Acta Crystallogr. , Sect. D V. 62 392 2006
(for further references see the
PDB file header
)
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 4-METHOXYBENZOIC ACID (ANNa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CHLORIDE ION (CLa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
4c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
4d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
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No.
Name
Count
Type
Full Name
1
ANN
1
Ligand/Ion
4-METHOXYBENZOIC ACID
2
CA
3
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:28 , GLY A:30 , GLY A:32 , ASP A:49 , HOH A:203 , ANN A:501 , TRS A:604
BINDING SITE FOR RESIDUE CA A 124
2
AC2
SOFTWARE
ASN A:71 , ASN A:72 , GLU A:92 , HOH A:226 , HOH A:233 , HOH A:317
BINDING SITE FOR RESIDUE CA A 125
3
AC3
SOFTWARE
ASN A:112 , CYS A:123 , HOH A:223 , HOH A:248 , HOH A:249 , TRS A:601
BINDING SITE FOR RESIDUE CA A 126
4
AC4
SOFTWARE
LYS A:12 , ILE A:82 , ARG A:100
BINDING SITE FOR RESIDUE CL A 127
5
AC5
SOFTWARE
VAL A:63 , ASN A:112 , LYS A:120 , MET A:121 , CYS A:123 , CA A:126 , HOH A:223 , HOH A:249 , HOH A:284
BINDING SITE FOR RESIDUE TRS A 601
6
AC6
SOFTWARE
GLY A:33 , MET A:56 , CYS A:61 , LYS A:62 , LEU A:64 , ASP A:66 , HOH A:229
BINDING SITE FOR RESIDUE TRS A 602
7
AC7
SOFTWARE
PHE A:106 , VAL A:109 , HOH A:210 , HOH A:287
BINDING SITE FOR RESIDUE TRS A 603
8
AC8
SOFTWARE
ASN A:24 , TYR A:25 , GLY A:26 , CYS A:27 , TYR A:28 , CYS A:29 , GLY A:30 , LEU A:31 , GLY A:32 , LYS A:120 , CA A:124
BINDING SITE FOR RESIDUE TRS A 604
9
AC9
SOFTWARE
PHE A:5 , LEU A:19 , TYR A:28 , GLY A:30 , ASP A:49 , TYR A:69 , CA A:124 , HOH A:204
BINDING SITE FOR RESIDUE ANN A 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:44-51)
2: PA2_ASP (A:95-105)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA21B_BOVIN
66-73
1
A:44-51
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA21B_BOVIN
117-127
1
A:95-105
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2b96a_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Phospholipase A2
(72)
Cow (Bos taurus), pancreas [TaxId: 9913]
(32)
1a
d2b96a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2b96A00 (A:1-123)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Cattle (Bos taurus)
(29)
1a
2b96A00
A:1-123
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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