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2B83
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (223 KB)
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(1)
Title
:
A SINGLE AMINO ACID SUBSTITUTION IN THE CLOSTRIDIUM BEIJERINCKII ALCOHOL DEHYDROGENASE IS CRITICAL FOR THERMOSTABILIZATION
Authors
:
E. Goihberg, O. Dym, Israel Structural Proteomics Center (Ispc)
Date
:
06 Oct 05 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Cbadh Mutant, Metal Binding, Structural Genomics, Israel Structural Proteomics Center, Ispc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Goihberg, O. Dym, S. Tel-Or, I. Levin, M. Peretz, Y. Burstein
A Single Proline Substitution Is Critical For The Thermostabilization Of Clostridium Beijerinckii Alcohol Dehydrogenase.
Proteins V. 66 196 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:37 , HIS A:59 , GLU A:60 , ASP A:150
BINDING SITE FOR RESIDUE ZN A 1353
2
AC2
SOFTWARE
CYS B:37 , HIS B:59 , GLU B:60 , ASP B:150 , HOH B:4354
BINDING SITE FOR RESIDUE ZN B 2353
3
AC3
SOFTWARE
CYS C:37 , HIS C:59 , GLU C:60 , ASP C:150
BINDING SITE FOR RESIDUE ZN C 3353
4
AC4
SOFTWARE
CYS D:37 , HIS D:59 , GLU D:60 , ASP D:150
BINDING SITE FOR RESIDUE ZN D 4353
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:58-72,B:58-72,C:58-72,D:58-72)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH_CLOBE
58-72
4
A:58-72
B:58-72
C:58-72
D:58-72
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2b83a1 (A:1-139,A:314-351)
1b: SCOP_d2b83c1 (C:1-139,C:314-351)
1c: SCOP_d2b83d1 (D:1-139,D:314-351)
1d: SCOP_d2b83b1 (B:1-139,B:314-351)
2a: SCOP_d2b83a2 (A:140-313)
2b: SCOP_d2b83c2 (C:140-313)
2c: SCOP_d2b83d2 (D:140-313)
2d: SCOP_d2b83b2 (B:140-313)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Bacterial secondary alcohol dehydrogenase
(7)
Clostridium beijerinckii [TaxId: 1520]
(4)
1a
d2b83a1
A:1-139,A:314-351
1b
d2b83c1
C:1-139,C:314-351
1c
d2b83d1
D:1-139,D:314-351
1d
d2b83b1
B:1-139,B:314-351
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Bacterial secondary alcohol dehydrogenase
(7)
Clostridium beijerinckii [TaxId: 1520]
(4)
2a
d2b83a2
A:140-313
2b
d2b83c2
C:140-313
2c
d2b83d2
D:140-313
2d
d2b83b2
B:140-313
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2b83A02 (A:155-292)
1b: CATH_2b83B02 (B:155-292)
1c: CATH_2b83C02 (C:155-292)
1d: CATH_2b83D02 (D:155-292)
2a: CATH_2b83A01 (A:1-154,A:293-351)
2b: CATH_2b83B01 (B:1-154,B:293-351)
2c: CATH_2b83C01 (C:1-154,C:293-351)
2d: CATH_2b83D01 (D:1-154,D:293-351)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Clostridium beijerinckii. Organism_taxid: 1520.
(4)
1a
2b83A02
A:155-292
1b
2b83B02
B:155-292
1c
2b83C02
C:155-292
1d
2b83D02
D:155-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Clostridium beijerinckii. Organism_taxid: 1520.
(4)
2a
2b83A01
A:1-154,A:293-351
2b
2b83B01
B:1-154,B:293-351
2c
2b83C01
C:1-154,C:293-351
2d
2b83D01
D:1-154,D:293-351
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Pfam Domains
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Asymmetric Unit 1
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