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2B7S
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
R381K MUTANT OF FLAVOCYTOCHROME C3
Authors
:
K. L. Pankhurst, C. G. Mowat, E. L. Rothery, C. S. Miles, M. D. Walkinshaw, G. A. Reid, S. K. Chapman
Date
:
05 Oct 05 (Deposition) - 23 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Flavocytochrome C3, Fumarate Reductase, Proton Delivery, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. L. Pankhurst, C. G. Mowat, E. L. Rothery, J. M. Hudson, A. K. Jones, C. S. Miles, M. D. Walkinshaw, F. A. Armstrong, G. A. Reid, S. K. Chapman
A Proton Delivery Pathway In The Soluble Fumarate Reductase From Shewanella Frigidimarina.
J. Biol. Chem. V. 281 20589 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: FUMARIC ACID (FUMa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FUM
1
Ligand/Ion
FUMARIC ACID
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NA
1
Ligand/Ion
SODIUM ION
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:506 , MET A:507 , GLY A:508 , GLU A:534 , THR A:536 , HOH A:1819
BINDING SITE FOR RESIDUE NA A 1810
2
AC2
SOFTWARE
HIS A:8 , VAL A:9 , CYS A:14 , CYS A:17 , HIS A:18 , LEU A:24 , SER A:73 , ALA A:74 , HIS A:75 , HOH A:1924 , HOH A:2018 , HOH A:2100 , HOH A:2417
BINDING SITE FOR RESIDUE HEM A 801
3
AC3
SOFTWARE
LEU A:4 , PHE A:7 , HIS A:8 , GLN A:12 , SER A:16 , GLN A:35 , CYS A:36 , CYS A:39 , HIS A:40 , HIS A:72 , TYR A:94 , HEM A:803 , HOH A:2165 , HOH A:2568
BINDING SITE FOR RESIDUE HEM A 802
4
AC4
SOFTWARE
HIS A:40 , LEU A:43 , VAL A:46 , HIS A:52 , ALA A:57 , HIS A:58 , VAL A:66 , ALA A:67 , CYS A:68 , CYS A:71 , HIS A:72 , PHE A:90 , ASN A:91 , MET A:92 , HEM A:802 , HEM A:804 , HOH A:1885 , HOH A:1942 , HOH A:2192 , HOH A:2195 , HOH A:2222 , HOH A:2397
BINDING SITE FOR RESIDUE HEM A 803
5
AC5
SOFTWARE
HIS A:54 , TYR A:55 , ASN A:56 , SER A:60 , HIS A:61 , PHE A:62 , CYS A:82 , SER A:84 , CYS A:85 , HIS A:86 , PHE A:88 , LEU A:167 , GLN A:338 , VAL A:374 , LYS A:431 , LYS A:434 , TYR A:435 , HEM A:803 , HOH A:1826 , HOH A:1870 , HOH A:1932 , HOH A:1944 , HOH A:2029 , HOH A:2116 , HOH A:2398
BINDING SITE FOR RESIDUE HEM A 804
6
AC6
SOFTWARE
VAL A:132 , GLY A:133 , GLY A:135 , GLY A:136 , ALA A:137 , GLU A:156 , LYS A:157 , GLU A:158 , GLY A:162 , GLY A:163 , ASN A:164 , ALA A:165 , LEU A:167 , ALA A:168 , ALA A:169 , GLY A:170 , GLY A:171 , THR A:276 , ARG A:277 , GLY A:278 , ALA A:312 , THR A:313 , GLY A:314 , THR A:336 , ASN A:337 , GLN A:338 , ASP A:344 , MET A:375 , HIS A:504 , HIS A:505 , GLY A:533 , GLU A:534 , ARG A:544 , GLY A:547 , ASN A:548 , ALA A:549 , ILE A:550 , ILE A:553 , FUM A:1806 , HOH A:1813 , HOH A:1835 , HOH A:1842 , HOH A:1845 , HOH A:1852
BINDING SITE FOR RESIDUE FAD A 1805
7
AC7
SOFTWARE
GLY A:170 , MET A:236 , HIS A:365 , THR A:377 , GLU A:378 , ARG A:402 , HIS A:504 , ARG A:544 , GLY A:546 , GLY A:547 , FAD A:1805
BINDING SITE FOR RESIDUE FUM A 1806
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:9-91,A:9-91)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
FRDA_SHEFR
9-91
1
A:9-91
FRDA_SHEFN
34-116
1
A:9-91
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2b7sa1 (A:1-102)
2a: SCOP_d2b7sa3 (A:362-504)
3a: SCOP_d2b7sa2 (A:111-361,A:512-568)
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Classes
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)
(
)
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(
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
(22)
Shewanella frigidimarina [TaxId: 56812]
(16)
1a
d2b7sa1
A:1-102
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase)
(19)
Shewanella frigidimarina [TaxId: 56812]
(16)
2a
d2b7sa3
A:362-504
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
(45)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase)
(19)
Shewanella frigidimarina [TaxId: 56812]
(16)
3a
d2b7sa2
A:111-361,A:512-568
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2b7sA02 (A:103-359,A:506-568)
2a: CATH_2b7sA03 (A:365-502)
3a: CATH_2b7sA01 (A:1-99)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
1a
2b7sA02
A:103-359,A:506-568
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C3; Chain A, domain 1
(40)
Homologous Superfamily
:
Flavocytochrome C3; Chain A, domain 1
(40)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
2a
2b7sA03
A:365-502
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Flavocytochrome C3; Chain A, domain 2
(23)
Homologous Superfamily
:
Flavocytochrome C3; Chain A
(23)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
3a
2b7sA01
A:1-99
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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