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2B7P
Asym. Unit
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Asym.Unit (139 KB)
Biol.Unit 1 (264 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF QUINOLINIC ACID PHOSPHORIBOSYLTRANSFERASE FROM HELICOBACTER PYLORI
Authors
:
M. K. Kim, Y. J. Im, J. H. Lee, S. H. Eom
Date
:
05 Oct 05 (Deposition) - 14 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Quinolinate Phosphoribosyltransferase, Quinolinic Acid, Helicobacter Pylori, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Kim, Y. J. Im, J. H. Lee, S. H. Eom
Crystal Structure Of Quinolinic Acid Phosphoribosyltransferase From Helicobacter Pylori
Proteins V. 63 252 2006
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PHTHALIC ACID (PHTa)
1b: PHTHALIC ACID (PHTb)
1c: PHTHALIC ACID (PHTc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
PHT
3
Ligand/Ion
PHTHALIC ACID
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:126 , GLY A:236 , ASN A:237 , VAL A:256 , GLY A:257 , ALA A:258 , HIS A:261
BINDING SITE FOR RESIDUE SO4 A 2001
2
AC2
SOFTWARE
LYS B:126 , ASN B:237 , GLY B:257 , ALA B:258 , HIS B:261
BINDING SITE FOR RESIDUE SO4 B 2002
3
AC3
SOFTWARE
LYS C:126 , ASN C:237 , GLY C:257 , ALA C:258 , HIS C:261
BINDING SITE FOR RESIDUE SO4 C 2003
4
AC4
SOFTWARE
THR A:124 , ARG A:125 , HIS A:147 , ARG A:148 , MET A:156 , MET A:207 , GLU A:233 , HOH A:2003 , ARG B:91
BINDING SITE FOR RESIDUE PHT A 1001
5
AC5
SOFTWARE
ARG A:91 , THR B:124 , ARG B:125 , ARG B:148 , MET B:156 , LYS B:158 , MET B:207 , HOH B:2010
BINDING SITE FOR RESIDUE PHT B 1002
6
AC6
SOFTWARE
ARG C:91 , THR C:124 , ARG C:125 , HIS C:147 , ARG C:148 , LYS C:158 , GLU C:233 , HOH C:2015
BINDING SITE FOR RESIDUE PHT C 1003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2b7pa1 (A:1-102)
1b: SCOP_d2b7pb1 (B:1-102)
1c: SCOP_d2b7pc1 (C:1-102)
2a: SCOP_d2b7pa2 (A:103-273)
2b: SCOP_d2b7pb2 (B:103-273)
2c: SCOP_d2b7pc2 (C:103-273)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
Nicotinate/Quinolinate PRTase N-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Helicobacter pylori [TaxId: 210]
(2)
1a
d2b7pa1
A:1-102
1b
d2b7pb1
B:1-102
1c
d2b7pc1
C:1-102
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Nicotinate/Quinolinate PRTase C-terminal domain-like
(25)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Helicobacter pylori [TaxId: 210]
(2)
2a
d2b7pa2
A:103-273
2b
d2b7pb2
B:103-273
2c
d2b7pc2
C:103-273
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2b7pA02 (A:117-262)
1b: CATH_2b7pB02 (B:117-262)
1c: CATH_2b7pC02 (C:117-262)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Helicobacter pylori. Organism_taxid: 210.
(3)
1a
2b7pA02
A:117-262
1b
2b7pB02
B:117-262
1c
2b7pC02
C:117-262
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (139 KB)
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