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2B6B
Biol. Unit 1
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Asym.Unit (34 KB)
Biol.Unit 1, α-C (1.6 MB)
Biol.Unit 1 (1.6 MB)
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(1)
Title
:
CRYO EM STRUCTURE OF DENGUE COMPLEXED WITH CRD OF DC-SIGN
Authors
:
E. Pokidysheva, Y. Zhang, A. J. Battisti, C. M. Bator-Kelly, P. R. Chipm G. Gregorio, W. A. Hendrickson, R. J. Kuhn, M. G. Rossmann
Date
:
30 Sep 05 (Deposition) - 07 Mar 06 (Release) - 02 Mar 11 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
25.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (60x)
Keywords
:
Cryo Em Dengue Crd Dc-Sign, Icosahedral Virus, Virus-Receptor Complex
(Keyword Search:
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Reference
:
E. Pokidysheva, Y. Zhang, A. J. Battisti, C. M. Bator-Kelly, P. R. Chipman, C. Xiao, G. Gregorio, W. A. Hendrickson, R. J. Kuhn, M. G. Rossmann
Cryo-Em Reconstruction Of Dengue Virus In Complex With The Carbohydrate Recognition Domain Of Dc-Sign
Cell(Cambridge, Mass. ) V. 124 485 2006
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 60)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_050105 (A382S, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050105
A
382
S
CD209_HUMAN
Polymorphism
11465393
D
A
382
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 120)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (D:263-378)
2: C_TYPE_LECTIN_1 (D:356-377)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CD209_HUMAN
263-378
60
D:263-378
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
CD209_HUMAN
356-377
60
D:356-377
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Exons
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SCOP Domains
(3, 7)
Info
All SCOP Domains
1a: SCOP_d2b6ba1 (A:298-394)
1b: SCOP_d2b6bb1 (B:298-394)
1c: SCOP_d2b6bc1 (C:298-394)
2a: SCOP_d2b6bd1 (D:255-382)
3a: SCOP_d2b6ba2 (A:1-297)
3b: SCOP_d2b6bb2 (B:1-297)
3c: SCOP_d2b6bc2 (C:1-297)
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Class
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All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Class II viral fusion proteins C-terminal domain
(27)
Protein domain
:
Envelope glycoprotein
(14)
Dengue virus type 2 [TaxId: 11060]
(9)
1a
d2b6ba1
A:298-394
1b
d2b6bb1
B:298-394
1c
d2b6bc1
C:298-394
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d2b6bd1
D:255-382
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Viral glycoprotein, central and dimerisation domains
(24)
Superfamily
:
Viral glycoprotein, central and dimerisation domains
(24)
Family
:
Viral glycoprotein, central and dimerisation domains
(17)
Protein domain
:
Envelope glycoprotein
(9)
Dengue virus type 2 [TaxId: 11060]
(7)
3a
d2b6ba2
A:1-297
3b
d2b6bb2
B:1-297
3c
d2b6bc2
C:1-297
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CATH Domains
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Chain A
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Chain D
Asymmetric Unit 1
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Asym.Unit (34 KB)
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