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2B6B
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1, α-C (1.6 MB)
Biol.Unit 1 (1.6 MB)
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(1)
Title
:
CRYO EM STRUCTURE OF DENGUE COMPLEXED WITH CRD OF DC-SIGN
Authors
:
E. Pokidysheva, Y. Zhang, A. J. Battisti, C. M. Bator-Kelly, P. R. Chipm G. Gregorio, W. A. Hendrickson, R. J. Kuhn, M. G. Rossmann
Date
:
30 Sep 05 (Deposition) - 07 Mar 06 (Release) - 02 Mar 11 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
25.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (60x)
Keywords
:
Cryo Em Dengue Crd Dc-Sign, Icosahedral Virus, Virus-Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Pokidysheva, Y. Zhang, A. J. Battisti, C. M. Bator-Kelly, P. R. Chipman, C. Xiao, G. Gregorio, W. A. Hendrickson, R. J. Kuhn, M. G. Rossmann
Cryo-Em Reconstruction Of Dengue Virus In Complex With The Carbohydrate Recognition Domain Of Dc-Sign
Cell(Cambridge, Mass. ) V. 124 485 2006
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050105 (A382S, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050105
A
382
S
CD209_HUMAN
Polymorphism
11465393
D
A
382
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (D:263-378)
2: C_TYPE_LECTIN_1 (D:356-377)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CD209_HUMAN
263-378
1
D:263-378
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
CD209_HUMAN
356-377
1
D:356-377
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Exons
(3, 3)
Info
All Exons
Exon 1.5 (D:255-300)
Exon 1.6a (D:301-338)
Exon 1.7 (D:338-382)
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All Exon Boundaries
1: Boundary 1.4c/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.6a/1.7
4: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000315599
1
ENSE00001352512
chr19:
7812464-7812352
113
CD209_HUMAN
1-16
16
0
-
-
1.2c
ENST00000315599
2c
ENSE00001202067
chr19:
7812251-7812192
60
CD209_HUMAN
16-36
21
0
-
-
1.3
ENST00000315599
3
ENSE00000671477
chr19:
7811417-7811346
72
CD209_HUMAN
36-60
25
0
-
-
1.4c
ENST00000315599
4c
ENSE00001724938
chr19:
7810973-7810404
570
CD209_HUMAN
60-250
191
0
-
-
1.5
ENST00000315599
5
ENSE00001689133
chr19:
7809978-7809827
152
CD209_HUMAN
250-300
51
1
D:255-300
46
1.6a
ENST00000315599
6a
ENSE00001747548
chr19:
7809105-7808993
113
CD209_HUMAN
301-338
38
1
D:301-338
38
1.7
ENST00000315599
7
ENSE00001352516
chr19:
7808126-7804879
3248
CD209_HUMAN
338-404
67
1
D:338-382
45
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SCOP Domains
(3, 7)
Info
All SCOP Domains
1a: SCOP_d2b6ba1 (A:298-394)
1b: SCOP_d2b6bb1 (B:298-394)
1c: SCOP_d2b6bc1 (C:298-394)
2a: SCOP_d2b6bd1 (D:255-382)
3a: SCOP_d2b6ba2 (A:1-297)
3b: SCOP_d2b6bb2 (B:1-297)
3c: SCOP_d2b6bc2 (C:1-297)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Class II viral fusion proteins C-terminal domain
(27)
Protein domain
:
Envelope glycoprotein
(14)
Dengue virus type 2 [TaxId: 11060]
(9)
1a
d2b6ba1
A:298-394
1b
d2b6bb1
B:298-394
1c
d2b6bc1
C:298-394
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d2b6bd1
D:255-382
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Viral glycoprotein, central and dimerisation domains
(24)
Superfamily
:
Viral glycoprotein, central and dimerisation domains
(24)
Family
:
Viral glycoprotein, central and dimerisation domains
(17)
Protein domain
:
Envelope glycoprotein
(9)
Dengue virus type 2 [TaxId: 11060]
(7)
3a
d2b6ba2
A:1-297
3b
d2b6bb2
B:1-297
3c
d2b6bc2
C:1-297
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (34 KB)
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