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2B5L
Biol. Unit 1
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Asym.Unit (393 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (196 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DDB1 IN COMPLEX WITH SIMIAN VIRUS 5 V PROTEIN
Authors
:
T. Li, X. Chen, K. C. Garbutt, P. Zhou, N. Zheng
Date
:
28 Sep 05 (Deposition) - 28 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ddb1, Sv5-V, Beta Propeller, Propeller Cluster, Zinc Finger, Protein Binding/Viral Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Li, X. Chen, K. C. Garbutt, P. Zhou, N. Zheng
Structure Of Ddb1 In Complex With A Paramyxovirus V Protein: Viral Hijack Of A Propeller Cluster In Ubiquitin Ligase.
Cell(Cambridge, Mass. ) V. 124 105 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:194 , CYS C:206 , CYS C:208 , CYS C:211
BINDING SITE FOR RESIDUE ZN C 3001
2
AC2
SOFTWARE
HIS C:171 , CYS C:190 , CYS C:215 , CYS C:218
BINDING SITE FOR RESIDUE ZN C 3002
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_023074 (L427F, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023074
L
427
F
DDB1_HUMAN
Polymorphism
28720299
A
L
427
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d2b5la3 (A:1044-1140)
1b: SCOP_d2b5lb3 (B:1044-1140)
2a: SCOP_d2b5la1 (A:14-354)
2b: SCOP_d2b5la2 (A:1-13,A:355-392,A:708-1043)
2c: SCOP_d2b5la4 (A:393-707)
2d: SCOP_d2b5lb1 (B:14-354)
2e: SCOP_d2b5lb2 (B:1-13,B:355-392,B:708-1043)
2f: SCOP_d2b5lb4 (B:393-707)
3a: SCOP_d2b5lc_ (C:)
3b: SCOP_d2b5ld_ (D:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
DDB1 C-terminal-like
(2)
Superfamily
:
DDB1 C-terminal-like
(2)
Family
:
DDB1 C-terminal-like
(2)
Protein domain
:
DDB1 C-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2b5la3
A:1044-1140
1b
d2b5lb3
B:1044-1140
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
DDB1-like
(2)
Protein domain
:
DDB1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2b5la1
A:14-354
2b
d2b5la2
A:1-13,A:355-392,A:708-1043
2c
d2b5la4
A:393-707
2d
d2b5lb1
B:14-354
2e
d2b5lb2
B:1-13,B:355-392,B:708-1043
2f
d2b5lb4
B:393-707
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SV5-V core-like
(2)
Superfamily
:
SV5-V core-like
(2)
Family
:
SV5-V core-like
(2)
Protein domain
:
SV5-V core
(2)
Simian virus 5 [TaxId: 11207]
(2)
3a
d2b5lc_
C:
3b
d2b5ld_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (393 KB)
Header - Asym.Unit
Biol.Unit 1 (195 KB)
Header - Biol.Unit 1
Biol.Unit 2 (196 KB)
Header - Biol.Unit 2
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