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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2B5I
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
CYTOKINE RECEPTOR COMPLEX
Authors
:
X. Wang, M. Rickert, K. C. Garcia
Date
:
28 Sep 05 (Deposition) - 29 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Four-Helix Bundle, Fibronectin Domain, Cytokine-Cytokine Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Wang, M. Rickert, K. C. Garcia
Structure Of The Quaternary Complex Of Interleukin-2 With Its Alpha, Beta, And Gammac Receptors.
Science V. 310 1159 2005
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL B:115 , ASN B:123 , TRP B:166 , NAG B:216 , GLN C:59 , THR C:176
BINDING SITE FOR RESIDUE NAG B 215
2
AC2
SOFTWARE
TRP B:166 , NAG B:215 , HOH B:288
BINDING SITE FOR RESIDUE NAG B 216
3
AC3
SOFTWARE
PHE C:43 , TYR C:47 , ASN C:49 , LEU C:84 , NAG C:234 , HIS D:139 , ARG D:140 , GLY D:141
BINDING SITE FOR RESIDUE NAG C 233
4
AC4
SOFTWARE
NAG C:233 , LEU D:138 , ARG D:140
BINDING SITE FOR RESIDUE NAG C 234
5
AC5
SOFTWARE
PRO C:60 , ASN C:62 , HOH C:410
BINDING SITE FOR RESIDUE NAG C 300
6
AC6
SOFTWARE
ASN C:137 , HOH C:431 , HOH C:450 , VAL D:123 , GLY D:124
BINDING SITE FOR RESIDUE NAG C 400
[
close Site info
]
SAPs(SNPs)/Variants
(31, 31)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_002669 (C40G, chain C, )
02: VAR_002670 (E46G, chain C, )
03: VAR_002671 (E46K, chain C, )
04: VAR_021994 (S57F, chain B, )
05: VAR_002672 (N62K, chain C, )
06: VAR_002673 (Y67C, chain C, )
07: VAR_002674 (Y83C, chain C, )
08: VAR_020611 (E87K, chain C, )
09: VAR_002675 (G92D, chain C, )
10: VAR_002676 (C93F, chain C, )
11: VAR_002677 (C93R, chain C, )
12: VAR_002678 (H101P, chain C, )
13: VAR_002679 (Y103N, chain C, )
14: VAR_002680 (Q122P, chain C, )
15: VAR_002681 (I131N, chain C, )
16: VAR_002682 (A134V, chain C, )
17: VAR_002683 (L140H, chain C, )
18: VAR_002684 (L150P, chain C, )
19: VAR_002685 (L150Q, chain C, )
20: VAR_002686 (C160R, chain C, )
21: VAR_002687 (L161S, chain C, )
22: VAR_002688 (R200C, chain C, )
23: VAR_002689 (R202W, chain C, )
24: VAR_002690 (R204C, chain C, )
25: VAR_002691 (R204H, chain C, )
26: VAR_002692 (F205C, chain C, )
27: VAR_002693 (L208P, chain C, )
28: VAR_002694 (C209Y, chain C, )
29: VAR_002695 (G210R, chain C, )
30: VAR_002697 (W218C, chain C, )
31: VAR_002698 (S219I, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_002669
C
62
G
IL2RG_HUMAN
Disease (XSCID)
---
C
C
40
G
02
UniProt
VAR_002670
E
68
G
IL2RG_HUMAN
Disease (XSCID)
---
C
E
46
G
03
UniProt
VAR_002671
E
68
K
IL2RG_HUMAN
Disease (XSCID)
---
C
E
46
K
04
UniProt
VAR_021994
S
83
F
IL2RB_HUMAN
Polymorphism
2228143
B
S
57
F
05
UniProt
VAR_002672
N
84
K
IL2RG_HUMAN
Disease (XSCID)
---
C
N
62
K
06
UniProt
VAR_002673
Y
89
C
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
67
C
07
UniProt
VAR_002674
Y
105
C
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
83
C
08
UniProt
VAR_020611
E
109
K
IL2RG_HUMAN
Polymorphism
17875899
C
E
87
K
09
UniProt
VAR_002675
G
114
D
IL2RG_HUMAN
Disease (XSCID)
---
C
G
92
D
10
UniProt
VAR_002676
C
115
F
IL2RG_HUMAN
Disease (XSCID)
---
C
C
93
F
11
UniProt
VAR_002677
C
115
R
IL2RG_HUMAN
Disease (XSCID)
---
C
C
93
R
12
UniProt
VAR_002678
H
123
P
IL2RG_HUMAN
Disease (XSCID)
---
C
H
101
P
13
UniProt
VAR_002679
Y
125
N
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
103
N
14
UniProt
VAR_002680
Q
144
P
IL2RG_HUMAN
Disease (XSCID)
---
C
Q
122
P
15
UniProt
VAR_002681
I
153
N
IL2RG_HUMAN
Disease (XSCID)
---
C
I
131
N
16
UniProt
VAR_002682
A
156
V
IL2RG_HUMAN
Disease (XSCID)
---
C
A
134
V
17
UniProt
VAR_002683
L
162
H
IL2RG_HUMAN
Disease (XSCID)
---
C
L
140
H
18
UniProt
VAR_002684
L
172
P
IL2RG_HUMAN
Disease (XSCID)
---
C
L
150
P
19
UniProt
VAR_002685
L
172
Q
IL2RG_HUMAN
Disease (XSCID)
---
C
L
150
Q
20
UniProt
VAR_002686
C
182
R
IL2RG_HUMAN
Disease (XSCID)
---
C
C
160
R
21
UniProt
VAR_002687
L
183
S
IL2RG_HUMAN
Disease (XSCID)
---
C
L
161
S
22
UniProt
VAR_002688
R
222
C
IL2RG_HUMAN
Disease (XCID)
---
C
R
200
C
23
UniProt
VAR_002689
R
224
W
IL2RG_HUMAN
Disease (XSCID)
---
C
R
202
W
24
UniProt
VAR_002690
R
226
C
IL2RG_HUMAN
Disease (XSCID)
---
C
R
204
C
25
UniProt
VAR_002691
R
226
H
IL2RG_HUMAN
Disease (XSCID)
---
C
R
204
H
26
UniProt
VAR_002692
F
227
C
IL2RG_HUMAN
Disease (XSCID)
---
C
F
205
C
27
UniProt
VAR_002693
L
230
P
IL2RG_HUMAN
Disease (XSCID)
---
C
L
208
P
28
UniProt
VAR_002694
C
231
Y
IL2RG_HUMAN
Disease (XSCID)
---
C
C
209
Y
29
UniProt
VAR_002695
G
232
R
IL2RG_HUMAN
Disease (XSCID)
---
C
G
210
R
30
UniProt
VAR_002697
W
240
C
IL2RG_HUMAN
Disease (XSCID)
---
C
W
218
C
31
UniProt
VAR_002698
S
241
I
IL2RG_HUMAN
Disease (XSCID)
---
C
S
219
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: SUSHI (D:1-63|D:103-165)
2: INTERLEUKIN_2 (A:51-63)
3: FN3 (B:108-207,C:134-224)
4: HEMATOPO_REC_S_F1 (B:172-203,C:191-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
IL2RA_HUMAN
22-84
123-186
2
D:1-63
D:103-165
2
INTERLEUKIN_2
PS00424
Interleukin-2 signature.
IL2_HUMAN
71-83
1
A:51-63
3
FN3
PS50853
Fibronectin type-III domain profile.
IL2RB_HUMAN
134-234
1
B:108-207
IL2RG_HUMAN
156-253
1
C:134-224
4
HEMATOPO_REC_S_F1
PS01355
Short hematopoietin receptor family 1 signature.
IL2RB_HUMAN
198-229
1
B:172-203
IL2RG_HUMAN
213-246
1
C:191-224
[
close PROSITE info
]
Exons
(16, 16)
Info
All Exons
Exon 1.5a (B:6-42 (gaps))
Exon 1.6c (B:42-68)
Exon 1.7b (B:69-104)
Exon 1.8b (B:104-153)
Exon 1.9c (B:154-207)
Exon 2.1a (A:6-29)
Exon 2.1c (A:30-49)
Exon 2.2 (A:50-97 (gaps))
Exon 2.3b (A:98-133 (gaps))
Exon 3.2j (C:34-68)
Exon 3.3b (C:68-130)
Exon 3.3e (C:130-176)
Exon 3.4a (C:177-224)
Exon 4.1b (D:1-1)
Exon 4.2a (D:1-64 (gaps))
Exon 4.4b (D:103-165)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4a/1.5a
02: Boundary 1.5a/1.6c
03: Boundary 1.6c/1.7b
04: Boundary 1.7b/1.8b
05: Boundary 1.8b/1.9c
06: Boundary 1.9c/1.10a
07: Boundary -/2.1a
08: Boundary 2.1a/2.1c
09: Boundary 2.1c/2.2
10: Boundary 2.2/2.3b
11: Boundary 2.3b/-
12: Boundary 3.2a/3.2j
13: Boundary 3.2j/3.3b
14: Boundary 3.3b/3.3e
15: Boundary 3.3e/3.4a
16: Boundary 3.4a/3.5b
17: Boundary -/4.1b
18: Boundary 4.1b/4.2a
19: Boundary 4.2a/4.3
20: Boundary 4.3/4.4b
21: Boundary 4.4b/4.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000216223
3
ENSE00001045257
chr22:
37546030-37545865
166
IL2RB_HUMAN
-
0
0
-
-
1.4a
ENST00000216223
4a
ENSE00002154086
chr22:
37540245-37540125
121
IL2RB_HUMAN
1-30
30
0
-
-
1.5a
ENST00000216223
5a
ENSE00000653819
chr22:
37539675-37539561
115
IL2RB_HUMAN
30-68
39
1
B:6-42 (gaps)
37
1.6c
ENST00000216223
6c
ENSE00002174225
chr22:
37538552-37538474
79
IL2RB_HUMAN
68-94
27
1
B:42-68
27
1.7b
ENST00000216223
7b
ENSE00001806659
chr22:
37535262-37535157
106
IL2RB_HUMAN
95-130
36
1
B:69-104
36
1.8b
ENST00000216223
8b
ENSE00001618283
chr22:
37533775-37533627
149
IL2RB_HUMAN
130-179
50
1
B:104-153
50
1.9c
ENST00000216223
9c
ENSE00001618669
chr22:
37532433-37532268
166
IL2RB_HUMAN
180-235
56
1
B:154-207
54
1.10a
ENST00000216223
10a
ENSE00001654981
chr22:
37531482-37531368
115
IL2RB_HUMAN
235-273
39
0
-
-
1.11
ENST00000216223
11
ENSE00001718003
chr22:
37528508-37528424
85
IL2RB_HUMAN
273-301
29
0
-
-
1.12d
ENST00000216223
12d
ENSE00001045260
chr22:
37524888-37521878
3011
IL2RB_HUMAN
302-551
250
0
-
-
2.1a
ENST00000226730
1a
ENSE00001293064
chr4:
123377880-123377449
432
IL2_HUMAN
1-49
49
1
A:6-29
24
2.1c
ENST00000226730
1c
ENSE00000935280
chr4:
123377358-123377299
60
IL2_HUMAN
50-69
20
1
A:30-49
20
2.2
ENST00000226730
2
ENSE00000935278
chr4:
123375008-123374865
144
IL2_HUMAN
70-117
48
1
A:50-97 (gaps)
48
2.3b
ENST00000226730
3b
ENSE00001138256
chr4:
123373017-123372625
393
IL2_HUMAN
118-153
36
1
A:98-133 (gaps)
36
3.2a
ENST00000374202
2a
ENSE00000979104
X:70331481-70331275
207
IL2RG_HUMAN
1-39
39
0
-
-
3.2j
ENST00000374202
2j
ENSE00001762572
X:70330900-70330747
154
IL2RG_HUMAN
39-90
52
1
C:34-68
35
3.3b
ENST00000374202
3b
ENSE00001775873
X:70330538-70330354
185
IL2RG_HUMAN
90-152
63
1
C:68-130
63
3.3e
ENST00000374202
3e
ENSE00001729247
X:70330145-70330006
140
IL2RG_HUMAN
152-198
47
1
C:130-176
47
3.4a
ENST00000374202
4a
ENSE00001636586
X:70329240-70329078
163
IL2RG_HUMAN
199-253
55
1
C:177-224
48
3.5b
ENST00000374202
5b
ENSE00001782907
X:70328545-70328449
97
IL2RG_HUMAN
253-285
33
0
-
-
3.5d
ENST00000374202
5d
ENSE00001629003
X:70328196-70328127
70
IL2RG_HUMAN
285-308
24
0
-
-
3.5h
ENST00000374202
5h
ENSE00001462774
X:70327771-70327254
518
IL2RG_HUMAN
309-369
61
0
-
-
4.1b
ENST00000379959
1b
ENSE00001867972
chr10:
6104288-6104051
238
IL2RA_HUMAN
1-22
22
1
D:1-1
1
4.2a
ENST00000379959
2a
ENSE00001132124
chr10:
6067988-6067797
192
IL2RA_HUMAN
22-86
65
1
D:1-64 (gaps)
64
4.3
ENST00000379959
3
ENSE00000915063
chr10:
6066317-6066207
111
IL2RA_HUMAN
86-123
38
0
-
-
4.4b
ENST00000379959
4b
ENSE00000915061
chr10:
6063656-6063441
216
IL2RA_HUMAN
123-195
73
1
D:103-165
63
4.5
ENST00000379959
5
ENSE00000915060
chr10:
6061904-6061833
72
IL2RA_HUMAN
195-219
25
0
-
-
4.6b
ENST00000379959
6b
ENSE00001194318
chr10:
6061462-6061391
72
IL2RA_HUMAN
219-243
25
0
-
-
4.7
ENST00000379959
7
ENSE00001219989
chr10:
6060082-6060016
67
IL2RA_HUMAN
243-265
23
0
-
-
4.8d
ENST00000379959
8d
ENSE00001889413
chr10:
6054859-6052652
2208
IL2RA_HUMAN
265-272
8
0
-
-
[
close EXON info
]
SCOP Domains
(4, 7)
Info
All SCOP Domains
1a: SCOP_d2b5ia_ (A:)
2a: SCOP_d2b5ic1 (C:130-224)
2b: SCOP_d2b5ic2 (C:34-129)
3a: SCOP_d2b5ib1 (B:6-103)
3b: SCOP_d2b5ib2 (B:104-207)
4a: SCOP_d2b5id1 (D:1-64)
4b: SCOP_d2b5id2 (D:103-165)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Interleukin-2 (IL-2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2b5ia_
A:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Cytokine receptor common gamma chain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2b5ic1
C:130-224
2b
d2b5ic2
C:34-129
Protein domain
:
Interleukin-2 receptor beta chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d2b5ib1
B:6-103
3b
d2b5ib2
B:104-207
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Interleukin-2 receptor alpha chain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
4a
d2b5id1
D:1-64
4b
d2b5id2
D:103-165
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2b5iA00 (A:6-133)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
2b5iA00
A:6-133
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
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