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2B59
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
THE TYPE II COHESIN DOCKERIN COMPLEX
Authors
:
J. J. Adams, S. P. Smith, Montreal-Kingston Bacterial Structural G Initiative (Bsgi)
Date
:
27 Sep 05 (Deposition) - 11 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Cellulosome, Ef Hand, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Structural Genomics, Hydrolase-Structural Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Adams, G. Pal, Z. Jia, S. P. Smith
Mechanism Of Bacterial Cell-Surface Attachment Revealed By The Structure Of Cellulosomal Type Ii Cohesin-Dockerin Complex.
Proc. Natl. Acad. Sci. Usa V. 103 305 2006
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:135 , ASN B:137 , ASN B:139 , ALA B:141 , ASP B:146
BINDING SITE FOR RESIDUE CA B 501
2
AC2
SOFTWARE
ASP B:102 , VAL B:104 , ASP B:106 , SER B:108 , ASP B:113 , HOH B:503
BINDING SITE FOR RESIDUE CA B 502
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: DOCKERIN (B:96-163,B:96-163)
2: CLOS_CELLULOSOME_RPT (B:102-121|B:135-154,B:102-121|B:13...)
3: EF_HAND_1 (B:135-147,B:135-147)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DOCKERIN
PS51766
Dockerin domain profile.
CIPB_CLOTM
704-771
1
B:96-163
CIPA_CLOTH
1785-1852
1
B:96-163
2
CLOS_CELLULOSOME_RPT
PS00448
Clostridium cellulosome enzymes repeated domain signature.
CIPB_CLOTM
710-729
743-762
2
B:102-121
B:135-154
CIPA_CLOTH
1791-1810
1824-1843
2
B:102-121
B:135-154
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CIPB_CLOTM
743-755
1
B:135-147
CIPA_CLOTH
1824-1836
1
B:135-147
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2b59b1 (B:104-163)
2a: SCOP_d2b59a1 (A:17-182)
3a: SCOP_d2b59b2 (B:8-103)
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Protein Domains
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(
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Organisms
(
)
(
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Class
:
All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
Type I dockerin domain
(6)
Protein domain
:
Cellulosomal scaffolding protein A
(1)
Clostridium thermocellum [TaxId: 1515]
(1)
1a
d2b59b1
B:104-163
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Scaffolding dockerin binding protein A, SdbA
(3)
Clostridium thermocellum [TaxId: 1515]
(3)
2a
d2b59a1
A:17-182
Fold
:
Prealbumin-like
(433)
Superfamily
:
Carboxypeptidase regulatory domain-like
(4)
Family
:
Pre-dockerin domain
(1)
Protein domain
:
Cellulosomal scaffolding protein A
(1)
Clostridium thermocellum [TaxId: 1515]
(1)
3a
d2b59b2
B:8-103
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2b59A00 (A:17-182)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.680, no name defined]
(14)
Clostridium thermocellum atcc 27405. Organism_taxid: 203119. Strain: atcc 27405.
(1)
1a
2b59A00
A:17-182
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Pfam Domains
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