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2B4K
Asym. Unit
Info
Asym.Unit (346 KB)
Biol.Unit 1 (339 KB)
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(1)
Title
:
ACETOBACTER TURBIDANS ALPHA-AMINO ACID ESTER HYDROLASE COMPLEXED WITH PHENYLGLYCINE
Authors
:
T. R. M. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. Williams, G. Wy D. B. Janssen, B. W. Dijkstra
Date
:
26 Sep 05 (Deposition) - 27 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha-Beta Hydrolase, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. R. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. Williams, G. Wybenga, D. B. Janssen, B. W. Dijkstra
Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase: How A Single Mutation Improves An Antibiotic-Producing Enzyme.
J. Biol. Chem. V. 281 5804 2006
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: D-PHENYLGLYCINE (PG9a)
2b: D-PHENYLGLYCINE (PG9b)
2c: D-PHENYLGLYCINE (PG9c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
PG9
3
Ligand/Ion
D-PHENYLGLYCINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR D:112 , SER D:205 , TYR D:206 , ASP D:239 , TYR D:253 , GLU D:340 , ASP D:341
BINDING SITE FOR RESIDUE PG9 D 3598
2
AC2
SOFTWARE
TYR B:112 , SER B:205 , TYR B:206 , MET B:231 , ASP B:239 , TRP B:240 , TYR B:253 , GLU B:340 , ASP B:341 , GOL B:2432
BINDING SITE FOR RESIDUE PG9 B 3599
3
AC3
SOFTWARE
TYR A:112 , SER A:205 , TYR A:206 , MET A:231 , ASP A:239 , TRP A:240 , TYR A:253 , GLU A:340 , ASP A:341 , HIS A:370
BINDING SITE FOR RESIDUE PG9 A 3600
4
AC4
SOFTWARE
ARG C:578 , HIS C:594
BINDING SITE FOR RESIDUE GOL C 2430
5
AC5
SOFTWARE
ARG A:578 , HIS A:594 , LYS C:655
BINDING SITE FOR RESIDUE GOL A 2431
6
AC6
SOFTWARE
ARG B:247 , GLY B:249 , TRP B:493 , LEU B:623 , PG9 B:3599
BINDING SITE FOR RESIDUE GOL B 2432
7
AC7
SOFTWARE
ARG A:198 , LYS A:223
BINDING SITE FOR RESIDUE GOL A 2433
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2b4ka1 (A:435-666)
1b: SCOP_d2b4kb1 (B:435-666)
1c: SCOP_d2b4kc1 (C:435-666)
1d: SCOP_d2b4kd1 (D:435-666)
2a: SCOP_d2b4ka2 (A:50-434)
2b: SCOP_d2b4kb2 (B:50-434)
2c: SCOP_d2b4kc2 (C:50-434)
2d: SCOP_d2b4kd2 (D:50-434)
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Classes
(
)
(
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Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PepX C-terminal domain-like
(10)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
1a
d2b4ka1
A:435-666
1b
d2b4kb1
B:435-666
1c
d2b4kc1
C:435-666
1d
d2b4kd1
D:435-666
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
PepX catalytic domain-like
(19)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
2a
d2b4ka2
A:50-434
2b
d2b4kb2
B:50-434
2c
d2b4kc2
C:50-434
2d
d2b4kd2
D:50-434
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2b4kA01 (A:50-238,A:316-432)
1b: CATH_2b4kB01 (B:50-238,B:316-432)
1c: CATH_2b4kC01 (C:50-238,C:316-432)
1d: CATH_2b4kD01 (D:50-238,D:316-432)
2a: CATH_2b4kA02 (A:240-315)
2b: CATH_2b4kB02 (B:240-315)
2c: CATH_2b4kC02 (C:240-315)
2d: CATH_2b4kD02 (D:240-315)
3a: CATH_2b4kA03 (A:433-666)
3b: CATH_2b4kB03 (B:433-666)
3c: CATH_2b4kC03 (C:433-666)
3d: CATH_2b4kD03 (D:433-666)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
1a
2b4kA01
A:50-238,A:316-432
1b
2b4kB01
B:50-238,B:316-432
1c
2b4kC01
C:50-238,C:316-432
1d
2b4kD01
D:50-238,D:316-432
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Homologous Superfamily
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
2a
2b4kA02
A:240-315
2b
2b4kB02
B:240-315
2c
2b4kC02
C:240-315
2d
2b4kD02
D:240-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
3a
2b4kA03
A:433-666
3b
2b4kB03
B:433-666
3c
2b4kC03
C:433-666
3d
2b4kD03
D:433-666
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (346 KB)
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