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2B4G
Biol. Unit 1
Info
Asym.Unit (216 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (108 KB)
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(1)
Title
:
DIHYDROOROTATE DEHYDROGENASE
Authors
:
T. L. Arakaki, E. A. Merritt, Structural Genomics Of Pathogenic Pr Consortium (Sgpp)
Date
:
23 Sep 05 (Deposition) - 11 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. L. Arakaki, F. S. Buckner, J. R. Gillespie, N. A. Malmquist, M. A. Phillips, O. Kalyuzhniy, J. R. Luft, G. T. Detitta, C. L. Verlinde W. C. Van Voorhis, W. G. Hol, E. A. Merritt
Characterization Of Trypanosoma Brucei Dihydroorotate Dehydrogenase As A Possible Drug Target; Structural, Kineti And Rnai Studies
Mol. Microbiol. V. 68 37 2008
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
2c: FLAVIN MONONUCLEOTIDE (FMNc)
2d: FLAVIN MONONUCLEOTIDE (FMNd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: OROTIC ACID (OROa)
4b: OROTIC ACID (OROb)
4c: OROTIC ACID (OROc)
4d: OROTIC ACID (OROd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
GOL
2
Ligand/Ion
GLYCEROL
4
ORO
2
Ligand/Ion
OROTIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:139 , ASN A:199 , ILE B:172
BINDING SITE FOR RESIDUE BR A 1411
02
AC2
SOFTWARE
TYR A:169 , PHE A:170 , HIS A:174
BINDING SITE FOR RESIDUE BR A 1412
03
AC3
SOFTWARE
HOH A:1515
BINDING SITE FOR RESIDUE BR A 1414
04
AC4
SOFTWARE
PRO A:161 , HOH A:1500
BINDING SITE FOR RESIDUE BR A 1415
05
AC5
SOFTWARE
ALA A:19 , ALA A:20 , GLY A:21 , LYS A:44 , SER A:45 , TYR A:59 , ASN A:68 , MET A:70 , ASN A:128 , LYS A:165 , VAL A:194 , ASN A:195 , GLY A:222 , GLY A:223 , VAL A:226 , CYS A:249 , GLY A:250 , GLY A:251 , GLY A:272 , THR A:273 , ORO A:1399 , HOH A:1418 , HOH A:1438 , HOH A:1459
BINDING SITE FOR RESIDUE FMN A 1400
06
AC6
SOFTWARE
LYS A:44 , ASN A:68 , MET A:70 , GLY A:71 , LEU A:72 , ASN A:128 , CYS A:131 , PRO A:132 , ASN A:133 , ASN A:195 , SER A:196 , FMN A:1400
BINDING SITE FOR RESIDUE ORO A 1399
07
AC7
SOFTWARE
ILE A:172 , ARG A:239 , ARG A:240 , HOH A:1504 , HOH A:1521 , HOH A:1568 , LYS B:215 , PHE B:218
BINDING SITE FOR RESIDUE GOL A 1401
08
AC8
SOFTWARE
ASP A:277 , ASP D:277
BINDING SITE FOR RESIDUE GOL A 1403
09
AC9
SOFTWARE
ASN B:296 , GLU D:27
BINDING SITE FOR RESIDUE BR B 2410
10
BC1
SOFTWARE
ALA B:19 , ALA B:20 , GLY B:21 , LYS B:44 , SER B:45 , ASN B:68 , ASN B:128 , LYS B:165 , VAL B:194 , ASN B:195 , GLY B:223 , VAL B:226 , CYS B:249 , GLY B:250 , GLY B:251 , GLY B:272 , THR B:273 , ORO B:2399 , HOH B:2411 , HOH B:2414 , HOH B:2435
BINDING SITE FOR RESIDUE FMN B 2400
11
BC2
SOFTWARE
LYS B:44 , ASN B:68 , MET B:70 , GLY B:71 , LEU B:72 , ASN B:128 , CYS B:131 , PRO B:132 , ASN B:133 , ASN B:195 , SER B:196 , FMN B:2400
BINDING SITE FOR RESIDUE ORO B 2399
12
BC8
SOFTWARE
HOH A:1556 , HOH A:1581 , TYR C:59 , MET C:70 , HIS C:276 , BR C:3411 , HOH C:4509 , HOH C:4567
BINDING SITE FOR RESIDUE GOL C 3401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2b4gb_ (B:)
1b: SCOP_d2b4gc_ (C:)
1c: SCOP_d2b4gd_ (D:)
2a: SCOP_d2b4ga1 (A:2-313)
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(1)
1a
d2b4gb_
B:
1b
d2b4gc_
C:
1c
d2b4gd_
D:
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(1)
2a
d2b4ga1
A:2-313
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2b4gB01 (B:1-53,B:72-196,B:223-313)
1b: CATH_2b4gC01 (C:1-53,C:72-196,C:223-313)
1c: CATH_2b4gA01 (A:2-53,A:72-196,A:223-313)
1d: CATH_2b4gD01 (D:2-53,D:72-196,D:223-313)
2a: CATH_2b4gA02 (A:54-71,A:197-222)
2b: CATH_2b4gB02 (B:54-71,B:197-222)
2c: CATH_2b4gC02 (C:54-71,C:197-222)
2d: CATH_2b4gD02 (D:54-71,D:197-222)
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)
(
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Trypanosoma brucei. Organism_taxid: 5691.
(2)
1a
2b4gB01
B:1-53,B:72-196,B:223-313
1b
2b4gC01
C:1-53,C:72-196,C:223-313
1c
2b4gA01
A:2-53,A:72-196,A:223-313
1d
2b4gD01
D:2-53,D:72-196,D:223-313
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Dihydroorotate Dehydrogenase A; chain A, domain 2
(22)
Homologous Superfamily
:
Dihydroorotate Dehydrogenase A, chain A, domain 2
(22)
Trypanosoma brucei. Organism_taxid: 5691.
(1)
2a
2b4gA02
A:54-71,A:197-222
2b
2b4gB02
B:54-71,B:197-222
2c
2b4gC02
C:54-71,C:197-222
2d
2b4gD02
D:54-71,D:197-222
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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