PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2B49
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 3
Authors
:
E. Ugochukwu, C. Arrowsmith, A. Barr, G. Bunkoczi, S. Das, J. Debreczen A. Edwards, J. Eswaran, S. Knapp, M. Sundstrom, A. Turnbull, F. Von De J. Weigelt, Structural Genomics Consortium (Sgc)
Date
:
23 Sep 05 (Deposition) - 04 Oct 05 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Tyrosine Phosphatase, Non-Receptor Type, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_055256 (D763N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_055256
D
763
N
PTN3_HUMAN
Polymorphism
10116806
A
D
763
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:646-901)
2: TYR_PHOSPHATASE_2 (A:819-892)
3: TYR_PHOSPHATASE_1 (A:840-850)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTN3_HUMAN
646-901
1
A:646-901
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTN3_HUMAN
819-892
1
A:819-892
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTN3_HUMAN
840-850
1
A:840-850
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.19 (A:646-651)
Exon 1.22 (A:652-682)
Exon 1.23 (A:682-702)
Exon 1.24b (A:703-751)
Exon 1.25a (A:752-794)
Exon 1.26 (A:795-843)
Exon 1.27 (A:843-888)
Exon 1.28b (A:889-904)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18/1.19
2: Boundary 1.19/1.22
3: Boundary 1.22/1.23
4: Boundary 1.23/1.24b
5: Boundary 1.24b/1.25a
6: Boundary 1.25a/1.26
7: Boundary 1.26/1.27
8: Boundary 1.27/1.28b
9: Boundary 1.28b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000374541
1b
ENSE00001463801
chr9:
112260586-112260499
88
PTN3_HUMAN
-
0
0
-
-
1.2a
ENST00000374541
2a
ENSE00001463800
chr9:
112225737-112225577
161
PTN3_HUMAN
1-46
46
0
-
-
1.3
ENST00000374541
3
ENSE00001681728
chr9:
112219679-112219572
108
PTN3_HUMAN
47-82
36
0
-
-
1.4
ENST00000374541
4
ENSE00001733651
chr9:
112219495-112219453
43
PTN3_HUMAN
83-97
15
0
-
-
1.5
ENST00000374541
5
ENSE00001689765
chr9:
112216854-112216776
79
PTN3_HUMAN
97-123
27
0
-
-
1.6b
ENST00000374541
6b
ENSE00001788195
chr9:
112211135-112211091
45
PTN3_HUMAN
123-138
16
0
-
-
1.7
ENST00000374541
7
ENSE00001625396
chr9:
112207572-112207520
53
PTN3_HUMAN
138-156
19
0
-
-
1.8
ENST00000374541
8
ENSE00001606103
chr9:
112200514-112200394
121
PTN3_HUMAN
156-196
41
0
-
-
1.9
ENST00000374541
9
ENSE00001747223
chr9:
112199250-112199163
88
PTN3_HUMAN
196-225
30
0
-
-
1.10
ENST00000374541
10
ENSE00001750132
chr9:
112195441-112195353
89
PTN3_HUMAN
226-255
30
0
-
-
1.11
ENST00000374541
11
ENSE00000983477
chr9:
112190964-112190901
64
PTN3_HUMAN
255-276
22
0
-
-
1.12
ENST00000374541
12
ENSE00000983478
chr9:
112189402-112189230
173
PTN3_HUMAN
277-334
58
0
-
-
1.13
ENST00000374541
13
ENSE00000806056
chr9:
112185132-112184998
135
PTN3_HUMAN
334-379
46
0
-
-
1.14
ENST00000374541
14
ENSE00000806055
chr9:
112182880-112182704
177
PTN3_HUMAN
379-438
60
0
-
-
1.15
ENST00000374541
15
ENSE00001090540
chr9:
112172695-112172509
187
PTN3_HUMAN
438-500
63
0
-
-
1.16
ENST00000374541
16
ENSE00001090547
chr9:
112172356-112172279
78
PTN3_HUMAN
501-526
26
0
-
-
1.17
ENST00000374541
17
ENSE00001090546
chr9:
112170657-112170601
57
PTN3_HUMAN
527-545
19
0
-
-
1.18
ENST00000374541
18
ENSE00001090539
chr9:
112168898-112168742
157
PTN3_HUMAN
546-598
53
0
-
-
1.19
ENST00000374541
19
ENSE00001090545
chr9:
112166888-112166728
161
PTN3_HUMAN
598-651
54
1
A:646-651
6
1.22
ENST00000374541
22
ENSE00001090543
chr9:
112153841-112153751
91
PTN3_HUMAN
652-682
31
1
A:652-682
31
1.23
ENST00000374541
23
ENSE00001090536
chr9:
112153479-112153418
62
PTN3_HUMAN
682-702
21
1
A:682-702
21
1.24b
ENST00000374541
24b
ENSE00001090538
chr9:
112151659-112151513
147
PTN3_HUMAN
703-751
49
1
A:703-751
49
1.25a
ENST00000374541
25a
ENSE00001090542
chr9:
112145831-112145703
129
PTN3_HUMAN
752-794
43
1
A:752-794
43
1.26
ENST00000374541
26
ENSE00001732241
chr9:
112144727-112144582
146
PTN3_HUMAN
795-843
49
1
A:795-843
49
1.27
ENST00000374541
27
ENSE00001661887
chr9:
112144067-112143932
136
PTN3_HUMAN
843-888
46
1
A:843-888
46
1.28b
ENST00000374541
28b
ENSE00001463784
chr9:
112141913-112137979
3935
PTN3_HUMAN
889-913
25
1
A:889-904
16
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2b49a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2b49a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2b49A00 (A:646-904)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2b49A00
A:646-904
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (53 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2B49
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help