PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2B3A
Asym. Unit
Info
Asym.Unit (238 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF THE RAL GUANOSINE DISSOCIATION STIMULATOR
Authors
:
W. Gronwald, T. Maurer, R. Fuechsl, S. Wohlgemuth, C. Herrmann, H. R. Kalbitzer
Date
:
20 Sep 05 (Deposition) - 26 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Ras Binding Domain, Ubiquitin Fold, Signal Transduction, Nmr, Automatically Solved, Auremol, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Gronwald, T. Maurer, R. Fuechsl, S. Wohlgemuth, C. Herrmann, H. R. Kalbitzer
New Insights Into Binding Of The Possible Cancer Target Ralgds
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RA (A:11-97)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RA
PS50200
Ras-associating (RA) domain profile.
GNDS_HUMAN
798-885
1
A:11-97
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.17f (A:11-31)
Exon 1.17k (A:32-70)
Exon 1.17o (A:70-97)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.17a/1.17f
2: Boundary 1.17f/1.17k
3: Boundary 1.17k/1.17o
4: Boundary 1.17o/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000372050
3b
ENSE00001514306
chr9:
135996563-135996359
205
GNDS_HUMAN
1-61
61
0
-
-
1.4
ENST00000372050
4
ENSE00001801549
chr9:
135987539-135987429
111
GNDS_HUMAN
62-98
37
0
-
-
1.5
ENST00000372050
5
ENSE00001694768
chr9:
135985876-135985683
194
GNDS_HUMAN
99-163
65
0
-
-
1.6a
ENST00000372050
6a
ENSE00001804795
chr9:
135985108-135985013
96
GNDS_HUMAN
163-195
33
0
-
-
1.7a
ENST00000372050
7a
ENSE00001736419
chr9:
135984253-135984060
194
GNDS_HUMAN
195-260
66
0
-
-
1.8a
ENST00000372050
8a
ENSE00001137115
chr9:
135983793-135983375
419
GNDS_HUMAN
260-399
140
0
-
-
1.9
ENST00000372050
9
ENSE00001137109
chr9:
135982687-135982472
216
GNDS_HUMAN
400-471
72
0
-
-
1.10
ENST00000372050
10
ENSE00001137104
chr9:
135982135-135982032
104
GNDS_HUMAN
472-506
35
0
-
-
1.11
ENST00000372050
11
ENSE00001137096
chr9:
135981403-135981319
85
GNDS_HUMAN
506-534
29
0
-
-
1.12c
ENST00000372050
12c
ENSE00001137089
chr9:
135979718-135979650
69
GNDS_HUMAN
535-557
23
0
-
-
1.13b
ENST00000372050
13b
ENSE00001137082
chr9:
135979220-135979134
87
GNDS_HUMAN
558-586
29
0
-
-
1.14
ENST00000372050
14
ENSE00000954148
chr9:
135978649-135978617
33
GNDS_HUMAN
587-597
11
0
-
-
1.15
ENST00000372050
15
ENSE00001137069
chr9:
135978287-135978166
122
GNDS_HUMAN
598-638
41
0
-
-
1.16b
ENST00000372050
16b
ENSE00001137061
chr9:
135977958-135977863
96
GNDS_HUMAN
638-670
33
0
-
-
1.17a
ENST00000372050
17a
ENSE00001137012
chr9:
135977526-135977325
202
GNDS_HUMAN
670-737
68
0
-
-
1.17f
ENST00000372050
17f
ENSE00002187251
chr9:
135977149-135976907
243
GNDS_HUMAN
738-818
81
1
A:11-31
21
1.17k
ENST00000372050
17k
ENSE00001720993
chr9:
135975769-135975655
115
GNDS_HUMAN
819-857
39
1
A:32-70
39
1.17o
ENST00000372050
17o
ENSE00001677413
chr9:
135974149-135973107
1043
GNDS_HUMAN
857-914
58
1
A:70-97
28
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2b3aa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ras-binding domain, RBD
(83)
Protein domain
:
Ral guanosine-nucleotide exchange factor, RalGDS
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2b3aa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2b3aA00 (A:11-97)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2b3aA00
A:11-97
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (238 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2B3A
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help