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2B2B
Biol. Unit 1
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Asym.Unit (20 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
STRUCTURAL DISTORTIONS IN PSORALEN CROSS-LINKED DNA
Authors
:
F. A. Hays, H. Yonggang, B. F. Eichman, W. Kong, J. Hearst, P. S. Ho
Date
:
19 Sep 05 (Deposition) - 03 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Recombination, Psoralen, Nucleic Acid Structure, Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. A. Hays, H. Yonggang, B. F. Eichman, W. Kong, J. Hearst, P. S. Ho
Structural Distortions In Psoralen Cross-Linked Dna
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
3a: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLP... (PSOa)
4a: SPERMINE (SPMa)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
PSO
2
Ligand/Ion
4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN
4
SPM
2
Ligand/Ion
SPERMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
DC A:1 , DG A:10 , HOH A:177 , DG B:19 , HOH B:111 , HOH B:204
BINDING SITE FOR RESIDUE SPM A 22
2
AC2
SOFTWARE
DG A:9 , DG B:17 , HOH B:50 , HOH B:93 , HOH B:97 , HOH B:223
BINDING SITE FOR RESIDUE CA B 23
3
AC3
SOFTWARE
HOH A:33 , HOH A:57 , HOH A:70 , HOH A:151 , HOH A:166 , HOH A:180
BINDING SITE FOR RESIDUE NA A 24
4
AC4
SOFTWARE
HOH A:42 , HOH A:90 , HOH A:224 , HOH B:75
BINDING SITE FOR RESIDUE CA A 25
5
AC5
SOFTWARE
HOH A:36 , HOH A:53 , HOH A:126 , HOH A:142 , HOH B:48
BINDING SITE FOR RESIDUE NA B 26
6
AC6
SOFTWARE
DC A:4 , HOH A:29 , HOH A:141 , DT B:15
BINDING SITE FOR RESIDUE NA A 27
7
AC7
SOFTWARE
DC A:4 , DT A:5 , DA A:6 , DT B:15 , DA B:16
BINDING SITE FOR RESIDUE PSO A 21
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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