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2B25
Biol. Unit 3
Info
Asym.Unit (84 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (155 KB)
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(1)
Title
:
HUMAN PUTATIVE TRNA(1-METHYLADENOSINE)METHYLTRANSFERASE
Authors
:
W. Tempel, H. Wu, A. Dong, H. Zeng, P. Loppnau, C. Arrowsmith, A. Edwards M. Sundstrom, J. Weigelt, A. Bochkarev, A. N. Plotnikov, Structural Consortium (Sgc)
Date
:
16 Sep 05 (Deposition) - 27 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Structural Genomics, Methyl Transferase, Sam, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, W. Tempel, A. Dong, H. Zeng, P. Loppnau, C. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, A. Bochkarev, A. N. Plotnikov
Human Putative Trna(1-Methyladenosine)Methyltransferase
To Be Published
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: S-ADENOSYLMETHIONINE (SAMa)
1b: S-ADENOSYLMETHIONINE (SAMb)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
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No.
Name
Count
Type
Full Name
1
SAM
4
Ligand/Ion
S-ADENOSYLMETHIONINE
2
UNX
8
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:84 , THR A:87 , GLY A:111 , SER A:112 , GLY A:113 , SER A:114 , GLY A:115 , GLY A:116 , MET A:117 , GLU A:135 , VAL A:136 , ARG A:137 , HIS A:140 , ASP A:173 , ILE A:174 , ASP A:192 , MET A:193 , UNX A:701
BINDING SITE FOR RESIDUE SAM A 601
2
AC2
SOFTWARE
THR B:84 , THR B:87 , GLY B:111 , GLY B:113 , SER B:114 , GLY B:116 , MET B:117 , GLU B:135 , VAL B:136 , ARG B:137 , HIS B:140 , ASP B:173 , ILE B:174 , ASP B:192 , MET B:193 , UNX B:703
BINDING SITE FOR RESIDUE SAM B 602
3
AC3
SOFTWARE
MET A:193 , LEU A:194 , SAM A:601
BINDING SITE FOR RESIDUE UNX A 701
4
AC4
SOFTWARE
LEU B:194 , SAM B:602
BINDING SITE FOR RESIDUE UNX B 703
5
AC5
SOFTWARE
VAL B:218 , GLN B:222
BINDING SITE FOR RESIDUE UNX B 704
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SAM_TRM61 (A:11-329,B:11-329)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_TRM61
PS51620
tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile.
TR61B_HUMAN
154-472
4
A:11-329
B:11-329
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2b25b_ (B:)
2a: SCOP_d2b25a1 (A:6-329)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
tRNA(1-methyladenosine) methyltransferase-like
(5)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2b25b_
B:
Protein domain
:
Hypothetical protein FLJ20628
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2b25a1
A:6-329
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (84 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (40 KB)
Header - Biol.Unit 2
Biol.Unit 3 (155 KB)
Header - Biol.Unit 3
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