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2AZE
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
STRUCTURE OF THE RB C-TERMINAL DOMAIN BOUND TO AN E2F1-DP1 HETERODIMER
Authors
:
S. M. Rubin, A. L. Gall, N. Zheng, N. P. Pavletich
Date
:
10 Sep 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Coiled Coil, Beta Sandwich, Cell Cycle, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Rubin, A. L. Gall, N. Zheng, N. P. Pavletich
Structure Of The Rb C-Terminal Domain Bound To E2F1-Dp1: A Mechanism For Phosphorylation-Induced E2F Release.
Cell(Cambridge, Mass. ) V. 123 1093 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013607 (R252H, chain B, )
2: VAR_013608 (V276M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013607
R
252
H
E2F1_HUMAN
Polymorphism
3213172
B
R
252
H
2
UniProt
VAR_013608
V
276
M
E2F1_HUMAN
Polymorphism
3213173
B
V
276
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(11, 11)
Info
All Exons
Exon 1.24 (C:829-830)
Exon 1.25 (C:830-840)
Exon 1.26c (C:841-872)
Exon 2.4a (B:201-242)
Exon 2.5a (B:242-280)
Exon 2.6 (B:281-301)
Exon 3.9b (A:198-206)
Exon 3.10 (A:207-229)
Exon 3.11b (A:230-280)
Exon 3.12 (A:280-336)
Exon 3.14 (A:336-346)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.23/1.24
02: Boundary 1.24/1.25
03: Boundary 1.25/1.26c
04: Boundary 1.26c/1.27
05: Boundary 2.3/2.4a
06: Boundary 2.4a/2.5a
07: Boundary 2.5a/2.6
08: Boundary 2.6/2.7
09: Boundary 3.8a/3.9b
10: Boundary 3.9b/3.10
11: Boundary 3.10/3.11b
12: Boundary 3.11b/3.12
13: Boundary 3.12/3.14
14: Boundary 3.14/3.15b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000267163
1b
ENSE00002199946
chr13:
48877911-48878185
275
RB_HUMAN
1-46
46
0
-
-
1.2
ENST00000267163
2
ENSE00000939664
chr13:
48881416-48881542
127
RB_HUMAN
46-88
43
0
-
-
1.3
ENST00000267163
3
ENSE00000939665
chr13:
48916735-48916850
116
RB_HUMAN
89-127
39
0
-
-
1.4
ENST00000267163
4
ENSE00000939666
chr13:
48919216-48919335
120
RB_HUMAN
127-167
41
0
-
-
1.5
ENST00000267163
5
ENSE00000939667
chr13:
48921961-48921999
39
RB_HUMAN
167-180
14
0
-
-
1.6
ENST00000267163
6
ENSE00000939668
chr13:
48923092-48923159
68
RB_HUMAN
180-203
24
0
-
-
1.7a
ENST00000267163
7a
ENSE00000939669
chr13:
48934153-48934263
111
RB_HUMAN
203-240
38
0
-
-
1.8b
ENST00000267163
8b
ENSE00000939670
chr13:
48936951-48937093
143
RB_HUMAN
240-287
48
0
-
-
1.9
ENST00000267163
9
ENSE00000939671
chr13:
48939030-48939107
78
RB_HUMAN
288-313
26
0
-
-
1.10
ENST00000267163
10
ENSE00000939672
chr13:
48941630-48941739
110
RB_HUMAN
314-350
37
0
-
-
1.11
ENST00000267163
11
ENSE00000939673
chr13:
48942663-48942740
78
RB_HUMAN
350-376
27
0
-
-
1.12
ENST00000267163
12
ENSE00000939674
chr13:
48947541-48947628
88
RB_HUMAN
376-405
30
0
-
-
1.13
ENST00000267163
13
ENSE00000939675
chr13:
48951054-48951170
117
RB_HUMAN
406-444
39
0
-
-
1.14
ENST00000267163
14
ENSE00000939676
chr13:
48953730-48953786
57
RB_HUMAN
445-463
19
0
-
-
1.15
ENST00000267163
15
ENSE00000939677
chr13:
48954189-48954220
32
RB_HUMAN
464-474
11
0
-
-
1.16
ENST00000267163
16
ENSE00000939678
chr13:
48954301-48954377
77
RB_HUMAN
474-500
27
0
-
-
1.17
ENST00000267163
17
ENSE00000939679
chr13:
48955383-48955579
197
RB_HUMAN
500-565
66
0
-
-
1.19
ENST00000267163
19
ENSE00000939680
chr13:
49027129-49027247
119
RB_HUMAN
566-605
40
0
-
-
1.20b
ENST00000267163
20b
ENSE00000939681
chr13:
49030340-49030485
146
RB_HUMAN
605-654
50
0
-
-
1.21
ENST00000267163
21
ENSE00000939682
chr13:
49033824-49033969
146
RB_HUMAN
654-702
49
0
-
-
1.22
ENST00000267163
22
ENSE00000939683
chr13:
49037867-49037971
105
RB_HUMAN
703-737
35
0
-
-
1.23
ENST00000267163
23
ENSE00000939684
chr13:
49039134-49039247
114
RB_HUMAN
738-775
38
0
-
-
1.24
ENST00000267163
24
ENSE00000939685
chr13:
49039341-49039504
164
RB_HUMAN
776-830
55
1
C:829-830
2
1.25
ENST00000267163
25
ENSE00001003962
chr13:
49047496-49047526
31
RB_HUMAN
830-840
11
1
C:830-840
11
1.26c
ENST00000267163
26c
ENSE00000939686
chr13:
49050837-49050979
143
RB_HUMAN
841-888
48
1
C:841-872
32
1.27
ENST00000267163
27
ENSE00000939687
chr13:
49051491-49051540
50
RB_HUMAN
888-905
18
0
-
-
1.28c
ENST00000267163
28c
ENSE00001241067
chr13:
49054134-49056122
1989
RB_HUMAN
905-928
24
0
-
-
2.1a
ENST00000343380
1a
ENSE00001667355
chr20:
32274210-32273810
401
E2F1_HUMAN
1-87
87
0
-
-
2.2
ENST00000343380
2
ENSE00000661346
chr20:
32268222-32268132
91
E2F1_HUMAN
88-118
31
0
-
-
2.3
ENST00000343380
3
ENSE00000661345
chr20:
32267780-32267561
220
E2F1_HUMAN
118-191
74
0
-
-
2.4a
ENST00000343380
4a
ENSE00001387594
chr20:
32266159-32266007
153
E2F1_HUMAN
191-242
52
1
B:201-242
42
2.5a
ENST00000343380
5a
ENSE00000860058
chr20:
32265346-32265232
115
E2F1_HUMAN
242-280
39
1
B:242-280
39
2.6
ENST00000343380
6
ENSE00000661342
chr20:
32265136-32264911
226
E2F1_HUMAN
281-356
76
1
B:281-301
21
2.7
ENST00000343380
7
ENSE00001386402
chr20:
32264785-32263489
1297
E2F1_HUMAN
356-437
82
0
-
-
3.1c
ENST00000375370
1c
ENSE00001466880
chr13:
114239056-114239203
148
TFDP1_HUMAN
-
0
0
-
-
3.3
ENST00000375370
3
ENSE00002175315
chr13:
114240089-114240164
76
TFDP1_HUMAN
1-4
4
0
-
-
3.5
ENST00000375370
5
ENSE00001385204
chr13:
114265311-114265377
67
TFDP1_HUMAN
5-27
23
0
-
-
3.6
ENST00000375370
6
ENSE00000862637
chr13:
114277495-114277601
107
TFDP1_HUMAN
27-62
36
0
-
-
3.7a
ENST00000375370
7a
ENSE00000862639
chr13:
114285938-114286059
122
TFDP1_HUMAN
63-103
41
0
-
-
3.8a
ENST00000375370
8a
ENSE00001325757
chr13:
114287435-114287600
166
TFDP1_HUMAN
103-158
56
0
-
-
3.9b
ENST00000375370
9b
ENSE00001618735
chr13:
114288205-114288348
144
TFDP1_HUMAN
159-206
48
1
A:198-206
9
3.10
ENST00000375370
10
ENSE00000862642
chr13:
114288849-114288917
69
TFDP1_HUMAN
207-229
23
1
A:207-229
23
3.11b
ENST00000375370
11b
ENSE00001290461
chr13:
114290292-114290443
152
TFDP1_HUMAN
230-280
51
1
A:230-280
51
3.12
ENST00000375370
12
ENSE00000862645
chr13:
114290849-114291015
167
TFDP1_HUMAN
280-336
57
1
A:280-336
57
3.14
ENST00000375370
14
ENSE00000862648
chr13:
114292133-114292211
79
TFDP1_HUMAN
336-362
27
1
A:336-346
11
3.15b
ENST00000375370
15b
ENSE00001433161
chr13:
114294435-114295504
1070
TFDP1_HUMAN
362-410
49
0
-
-
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2azea1 (A:199-346)
2a: SCOP_d2azeb1 (B:201-301)
3a: SCOP_d2azec1 (C:829-872)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
E2F-DP heterodimerization region
(2)
Superfamily
:
E2F-DP heterodimerization region
(2)
Family
:
DP dimerization segment
(1)
Protein domain
:
Transcription factor DP-1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2azea1
A:199-346
Family
:
E2F dimerization segment
(1)
Protein domain
:
Transcription factor E2F1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2azeb1
B:201-301
Class
:
Peptides
(792)
Fold
:
Retinoblastoma-associated protein RB1 fragments
(1)
Superfamily
:
Retinoblastoma-associated protein RB1 fragments
(1)
Family
:
Retinoblastoma-associated protein RB1 fragments
(1)
Protein domain
:
Retinoblastoma-associated protein RB1 fragments
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d2azec1
C:829-872
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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