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2AYO
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (138 KB)
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(1)
Title
:
STRUCTURE OF USP14 BOUND TO UBQUITIN ALDEHYDE
Authors
:
M. Hu, P. Li, P. D. Jeffrey, Y. Shi
Date
:
07 Sep 05 (Deposition) - 18 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Deubiquitinating Enzyme, Dub, Usp14, Proteasome, Enzyme Mechanism, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hu, P. Li, L. Song, P. D. Jeffrey, T. A. Chenova, K. D. Wilkinson, R. E. Cohen, Y. Shi
Structure And Mechanisms Of The Proteasome-Associated Deubiquitinating Enzyme Usp14.
Embo J. V. 24 3747 2005
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: AMINO-ACETALDEHYDE (GLZa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLZ
1
Mod. Amino Acid
AMINO-ACETALDEHYDE
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (B:1-76,B:1-76,-|-|B:1-76,-|-|-|-|-...)
2: UBIQUITIN_1 (B:27-52,B:27-52,-|-|B:27-52,-|-|-|...)
3: USP_3 (A:104-482)
4: USP_1 (A:105-120)
5: USP_2 (A:417-435)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
1
B:1-76
RL40_HUMAN
1-76
1
B:1-76
UBB_HUMAN
1-76
77-152
153-228
1
-
-
B:1-76
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
B:1-76
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
1
B:27-52
RL40_HUMAN
27-52
1
B:27-52
UBB_HUMAN
27-52
103-128
179-204
1
-
-
B:27-52
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
B:27-52
3
USP_3
PS50235
Ubiquitin specific protease (USP) domain profile.
UBP14_HUMAN
105-483
1
A:104-482
4
USP_1
PS00972
Ubiquitin specific protease (USP) domain signature 1.
UBP14_HUMAN
106-121
1
A:105-120
5
USP_2
PS00973
Ubiquitin specific protease (USP) domain signature 2.
UBP14_HUMAN
418-436
1
A:417-435
[
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]
Exons
(14, 14)
Info
All Exons
Exon 1.4 (A:97-99)
Exon 1.5 (A:100-134)
Exon 1.6 (A:134-154)
Exon 1.7 (A:154-197)
Exon 1.8 (A:198-220)
Exon 1.9 (A:234-253)
Exon 1.10 (A:253-291)
Exon 1.11 (A:292-313)
Exon 1.12 (A:314-344)
Exon 1.13 (A:345-378)
Exon 1.14 (A:397-408)
Exon 1.15 (A:408-444)
Exon 1.16 (A:444-482)
Exon 2.2 (B:1-76)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
14: Boundary 1.16/-
15: Boundary 2.1/2.2
16: Boundary 2.2/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000261601
1b
ENSE00001208684
chr18:
158483-158714
232
UBP14_HUMAN
1-6
6
0
-
-
1.2
ENST00000261601
2
ENSE00001208695
chr18:
163308-163453
146
UBP14_HUMAN
6-54
49
0
-
-
1.3
ENST00000261601
3
ENSE00001208679
chr18:
166787-166819
33
UBP14_HUMAN
55-65
11
0
-
-
1.4
ENST00000261601
4
ENSE00001208675
chr18:
178933-179037
105
UBP14_HUMAN
66-100
35
1
A:97-99
3
1.5
ENST00000261601
5
ENSE00000948455
chr18:
180236-180339
104
UBP14_HUMAN
101-135
35
1
A:100-134
35
1.6
ENST00000261601
6
ENSE00000799430
chr18:
192842-192900
59
UBP14_HUMAN
135-155
21
1
A:134-154
21
1.7
ENST00000261601
7
ENSE00001208659
chr18:
196637-196767
131
UBP14_HUMAN
155-198
44
1
A:154-197
44
1.8
ENST00000261601
8
ENSE00000799432
chr18:
197616-197696
81
UBP14_HUMAN
199-225
27
1
A:198-220
23
1.9
ENST00000261601
9
ENSE00000664590
chr18:
198047-198132
86
UBP14_HUMAN
226-254
29
1
A:234-253
20
1.10
ENST00000261601
10
ENSE00000664627
chr18:
199202-199316
115
UBP14_HUMAN
254-292
39
1
A:253-291
39
1.11
ENST00000261601
11
ENSE00000799435
chr18:
202880-202945
66
UBP14_HUMAN
293-314
22
1
A:292-313
22
1.12
ENST00000261601
12
ENSE00000799436
chr18:
203098-203190
93
UBP14_HUMAN
315-345
31
1
A:314-344
31
1.13
ENST00000261601
13
ENSE00000799437
chr18:
204564-204692
129
UBP14_HUMAN
346-388
43
1
A:345-378
34
1.14
ENST00000261601
14
ENSE00001252715
chr18:
209971-210031
61
UBP14_HUMAN
389-409
21
1
A:397-408
12
1.15
ENST00000261601
15
ENSE00000799439
chr18:
210386-210493
108
UBP14_HUMAN
409-445
37
1
A:408-444
37
1.16
ENST00000261601
16
ENSE00001208689
chr18:
211133-213739
2607
UBP14_HUMAN
445-494
50
1
A:444-482
39
2.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
2.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
1
B:1-76
76
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ayob1 (B:1-76)
2a: SCOP_d2ayoa1 (A:100-482)
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)
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(
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)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d2ayob1
B:1-76
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Ubiquitin carboxyl-terminal hydrolase, UCH
(14)
Protein domain
:
Ubiquitin carboxyl-terminal hydrolase 14
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2ayoa1
A:100-482
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ayoB00 (B:1-75)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2ayoB00
B:1-75
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Pfam Domains
(0, 0)
Info
all PFAM domains
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