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2AYL
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (212 KB)
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(1)
Title
:
2.0 ANGSTROM CRYSTAL STRUCTURE OF MANGANESE PROTOPORPHYRIN IX-RECONSTITUTED OVINE PROSTAGLANDIN H2 SYNTHASE-1 COMPLEXED WITH FLURBIPROFEN
Authors
:
K. Gupta, B. S. Selinsky, P. J. Loll
Date
:
07 Sep 05 (Deposition) - 24 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cyclooxygenase, Non-Steroidal Anti-Inflammatory Drug, Peroxidase, Prostaglandin Synthase, Egf-Like Domain, Membrane Binding Domain, Maganese Protoporphyrin Ix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Gupta, B. S. Selinsky, P. J. Loll
2. 0 Angstroms Structure Of Prostaglandin H2 Synthase-1 Reconstituted With A Manganese Porphyrin Cofactor.
Acta Crystallogr. , Sect. D V. 62 151 2006
[
close entry info
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Hetero Components
(6, 38)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
1g: B-OCTYLGLUCOSIDE (BOGg)
2a: FLURBIPROFEN (FLPa)
2b: FLURBIPROFEN (FLPb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
5a: MANGANESE PROTOPORPHYRIN IX (MNHa)
5b: MANGANESE PROTOPORPHYRIN IX (MNHb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
7
Ligand/Ion
B-OCTYLGLUCOSIDE
2
FLP
2
Ligand/Ion
FLURBIPROFEN
3
GOL
5
Ligand/Ion
GLYCEROL
4
MAN
10
Ligand/Ion
ALPHA-D-MANNOSE
5
MNH
2
Ligand/Ion
MANGANESE PROTOPORPHYRIN IX
6
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:83 , PRO A:86 , ILE A:89 , VAL A:116 , VAL A:119 , ARG A:120 , LEU A:123 , GLU A:524 , HOH A:1773 , HOH A:1845 , HOH A:1925 , HOH A:2121
BINDING SITE FOR RESIDUE BOG A 751
02
AC2
SOFTWARE
ILE A:74 , HOH B:657 , ALA B:1105 , THR B:1106 , PHE B:1107
BINDING SITE FOR RESIDUE BOG A 752
03
AC3
SOFTWARE
THR A:70 , TRP B:1098 , ASP B:1101
BINDING SITE FOR RESIDUE BOG A 753
04
AC4
SOFTWARE
PHE A:91 , LEU A:92 , HIS A:95 , TRP A:98 , LEU A:99
BINDING SITE FOR RESIDUE BOG A 754
05
AC5
SOFTWARE
HOH B:80 , HOH B:107 , HOH B:534 , ARG B:1083 , PRO B:1086 , ILE B:1089 , VAL B:1116 , VAL B:1119 , ARG B:1120 , LEU B:1123 , GLU B:1524
BINDING SITE FOR RESIDUE BOG B 1751
06
AC6
SOFTWARE
HOH B:687 , HOH B:854 , SER B:1087 , PHE B:1088
BINDING SITE FOR RESIDUE BOG B 1750
07
AC7
SOFTWARE
PHE B:1091 , HIS B:1095 , TRP B:1098 , TRP B:1100
BINDING SITE FOR RESIDUE BOG B 1753
08
AC8
SOFTWARE
PRO A:40 , TYR A:55 , ASN A:68 , NAG A:662
BINDING SITE FOR RESIDUE NAG A 661
09
AC9
SOFTWARE
NAG A:661
BINDING SITE FOR RESIDUE NAG A 662
10
BC1
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , NAG A:672 , HOH A:1721 , HOH A:1798 , HOH A:1807 , HOH A:1866 , HOH A:1968 , HOH A:2107 , HOH A:2110 , HOH A:2132
BINDING SITE FOR RESIDUE NAG A 671
11
BC2
SOFTWARE
MET A:216 , NAG A:671 , MAN A:673 , HOH A:1894 , HOH A:2099 , HOH A:2110 , HOH A:2132 , TYR B:1242
BINDING SITE FOR RESIDUE NAG A 672
12
BC3
SOFTWARE
NAG A:672 , MAN A:674
BINDING SITE FOR RESIDUE MAN A 673
13
BC4
SOFTWARE
MAN A:673 , MAN A:675
BINDING SITE FOR RESIDUE MAN A 674
14
BC5
SOFTWARE
MAN A:674 , HOH B:705 , GLN B:1243 , PRO B:1270
BINDING SITE FOR RESIDUE MAN A 675
15
BC6
SOFTWARE
TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , TYR A:417 , NAG A:682 , HOH A:1902 , HOH A:2008
BINDING SITE FOR RESIDUE NAG A 681
16
BC7
SOFTWARE
GLN A:400 , GLN A:406 , NAG A:681 , MAN A:683 , HOH A:2008
BINDING SITE FOR RESIDUE NAG A 682
17
BC8
SOFTWARE
GLN A:400 , NAG A:682 , MAN A:684
BINDING SITE FOR RESIDUE MAN A 683
18
BC9
SOFTWARE
MAN A:683
BINDING SITE FOR RESIDUE MAN A 684
19
CC1
SOFTWARE
HOH B:600 , TYR B:1055 , ASN B:1068 , NAG B:1662
BINDING SITE FOR RESIDUE NAG B 1661
20
CC2
SOFTWARE
HOH B:857 , NAG B:1661
BINDING SITE FOR RESIDUE NAG B 1662
21
CC3
SOFTWARE
HOH A:1827 , HOH B:71 , HOH B:83 , HOH B:352 , HOH B:384 , HOH B:460 , GLU B:1140 , ASN B:1144 , TYR B:1147 , NAG B:1672
BINDING SITE FOR RESIDUE NAG B 1671
22
CC4
SOFTWARE
TYR A:242 , HOH B:289 , HOH B:460 , HOH B:769 , MET B:1216 , NAG B:1671 , MAN B:1673
BINDING SITE FOR RESIDUE NAG B 1672
23
CC5
SOFTWARE
HOH B:875 , NAG B:1672 , MAN B:1674
BINDING SITE FOR RESIDUE MAN B 1673
24
CC6
SOFTWARE
GLN A:243 , HOH B:875 , MAN B:1673 , MAN B:1675
BINDING SITE FOR RESIDUE MAN B 1674
25
CC7
SOFTWARE
GLN A:243 , PRO A:270 , MAN B:1674
BINDING SITE FOR RESIDUE MAN B 1675
26
CC8
SOFTWARE
GLN A:282 , HOH B:576 , TYR B:1402 , GLN B:1406 , ASN B:1410 , MET B:1413 , ASP B:1416 , TYR B:1417 , NAG B:1682
BINDING SITE FOR RESIDUE NAG B 1681
27
CC9
SOFTWARE
HOH B:690 , GLN B:1400 , TYR B:1402 , ASP B:1416 , NAG B:1681 , MAN B:1683
BINDING SITE FOR RESIDUE NAG B 1682
28
DC1
SOFTWARE
GLN B:1400 , NAG B:1682 , MAN B:1684
BINDING SITE FOR RESIDUE MAN B 1683
29
DC2
SOFTWARE
MAN B:1683
BINDING SITE FOR RESIDUE MAN B 1684
30
DC3
SOFTWARE
VAL A:116 , ARG A:120 , VAL A:349 , LEU A:352 , TYR A:355 , TYR A:385 , TRP A:387 , GLY A:526 , ALA A:527 , SER A:530
BINDING SITE FOR RESIDUE FLP A 1701
31
DC4
SOFTWARE
VAL B:1116 , ARG B:1120 , VAL B:1349 , LEU B:1352 , TYR B:1355 , TYR B:1385 , TRP B:1387 , ILE B:1523 , GLY B:1526 , ALA B:1527 , SER B:1530
BINDING SITE FOR RESIDUE FLP B 2701
32
DC5
SOFTWARE
ALA A:202 , GLN A:203 , THR A:206 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , MET A:391 , ILE A:444 , VAL A:447 , ASP A:450 , GOL A:760
BINDING SITE FOR RESIDUE MNH A 601
33
DC6
SOFTWARE
HOH B:452 , HOH B:851 , HOH B:883 , ALA B:1202 , GLN B:1203 , HIS B:1207 , PHE B:1210 , LYS B:1211 , THR B:1212 , LEU B:1295 , ASN B:1382 , TYR B:1385 , HIS B:1386 , HIS B:1388 , MET B:1391 , ILE B:1444 , ASP B:1450 , GOL B:1760
BINDING SITE FOR RESIDUE MNH B 1601
34
DC7
SOFTWARE
TYR A:234 , GLY A:235 , ASN A:237 , LEU A:238 , GLN A:241 , ARG A:333 , HOH A:1760 , HOH A:1848 , HOH B:141 , HOH B:352 , TRP B:1139 , SER B:1143
BINDING SITE FOR RESIDUE GOL A 758
35
DC8
SOFTWARE
LYS A:251 , TYR A:254 , VAL A:261 , ASN A:310 , ASP A:314
BINDING SITE FOR RESIDUE GOL A 759
36
DC9
SOFTWARE
GLN A:203 , HIS A:207 , LEU A:294 , MNH A:601 , HOH A:1826
BINDING SITE FOR RESIDUE GOL A 760
37
EC1
SOFTWARE
LYS B:1251 , TYR B:1254 , VAL B:1261 , ASN B:1310
BINDING SITE FOR RESIDUE GOL B 1759
38
EC2
SOFTWARE
HOH B:212 , GLN B:1203 , HIS B:1207 , LEU B:1294 , MNH B:1601
BINDING SITE FOR RESIDUE GOL B 1760
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R1097H, chain A/B, )
2: VAR_PGH1_SHEEP_002 (G1164G, chain A/B, )
3: VAR_PGH1_SHEEP_003 (R1456Q, chain A/B, )
4: VAR_PGH1_SHEEP_004 (E1520K, chain A/B, )
5: VAR_PGH1_SHEEP_005 (E1520Q, chain A/B, )
6: VAR_PGH1_SHEEP_006 (M1525I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
A
B
R
97
1097
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
A
B
G
164
1164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
A
B
R
456
1456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
A
B
E
520
1520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
A
B
E
520
1520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
A
B
M
525
1525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:32-70,B:1032-1070)
2: PEROXIDASE_3 (A:110-584,B:1110-1584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
2
A:32-70
B:1032-1070
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
2
A:110-584
B:1110-1584
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ayla1 (A:74-584)
1b: SCOP_d2aylb1 (B:1074-1584)
2a: SCOP_d2ayla2 (A:32-73)
2b: SCOP_d2aylb2 (B:1032-1073)
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
1a
d2ayla1
A:74-584
1b
d2aylb1
B:1074-1584
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
2a
d2ayla2
A:32-73
2b
d2aylb2
B:1032-1073
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2aylA02 (A:74-583)
1b: CATH_2aylB02 (B:1074-1583)
2a: CATH_2aylA01 (A:33-73)
2b: CATH_2aylB01 (B:1033-1073)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Sheep (Ovis aries)
(18)
1a
2aylA02
A:74-583
1b
2aylB02
B:1074-1583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Sheep (Ovis aries)
(18)
2a
2aylA01
A:33-73
2b
2aylB01
B:1033-1073
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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