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2AVJ
Biol. Unit 3
Info
Asym.Unit (41 KB)
Biol.Unit 1 (13 KB)
Biol.Unit 2 (12 KB)
Biol.Unit 3 (13 KB)
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(1)
Title
:
G4(BR)UTTG4 DIMERIC QUADRUPLEX
Authors
:
P. Hazel, G. N. Parkinson, S. Neidle
Date
:
30 Aug 05 (Deposition) - 28 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Quadruplex, Loop, Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Hazel, G. N. Parkinson, S. Neidle
Topology Variation And Loop Structural Homology In Crystal And Simulated Structures Of A Bimolecular Dna Quadruplex.
J. Am. Chem. Soc. V. 128 5480 2006
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUa)
1b: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUb)
1c: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUc)
1d: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUd)
1e: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUe)
1f: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUf)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
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No.
Name
Count
Type
Full Name
1
BRU
2
Mod. Nucleotide
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2
CAC
-1
Ligand/Ion
CACODYLATE ION
3
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC5 (SOFTWARE)
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Residues
Description
1
AC1
SOFTWARE
DG C:23 , DG C:33 , K C:69 , DG D:34 , DG D:44 , DG E:45 , DG E:55 , K E:68 , DG F:56 , DG F:66
BINDING SITE FOR RESIDUE K C 67
2
AC2
SOFTWARE
K C:67 , DG E:45 , DG E:46 , DG E:54 , DG E:55 , K E:70 , DG F:56 , DG F:57 , DG F:65 , DG F:66
BINDING SITE FOR RESIDUE K E 68
3
AC4
SOFTWARE
DG E:46 , DG E:47 , DG E:53 , DG E:54 , K E:68 , K E:71 , DG F:57 , DG F:58 , DG F:64 , DG F:65
BINDING SITE FOR RESIDUE K E 70
4
AC5
SOFTWARE
DG E:47 , DG E:48 , DG E:52 , DG E:53 , K E:70 , DG F:58 , DG F:59 , DG F:63 , DG F:64
BINDING SITE FOR RESIDUE K E 71
5
BC3
SOFTWARE
BRU F:60
BINDING SITE FOR RESIDUE K F 78
6
BC5
SOFTWARE
HOH E:128 , HOH E:195
BINDING SITE FOR RESIDUE K E 80
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Asymmetric Unit 1
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Asym.Unit (41 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
Biol.Unit 2 (12 KB)
Header - Biol.Unit 2
Biol.Unit 3 (13 KB)
Header - Biol.Unit 3
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