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2AVJ
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (13 KB)
Biol.Unit 2 (12 KB)
Biol.Unit 3 (13 KB)
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(1)
Title
:
G4(BR)UTTG4 DIMERIC QUADRUPLEX
Authors
:
P. Hazel, G. N. Parkinson, S. Neidle
Date
:
30 Aug 05 (Deposition) - 28 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Quadruplex, Loop, Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Hazel, G. N. Parkinson, S. Neidle
Topology Variation And Loop Structural Homology In Crystal And Simulated Structures Of A Bimolecular Dna Quadruplex.
J. Am. Chem. Soc. V. 128 5480 2006
[
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUa)
1b: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUb)
1c: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUc)
1d: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUd)
1e: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUe)
1f: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHO... (BRUf)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BRU
6
Mod. Nucleotide
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
K
14
Ligand/Ion
POTASSIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DG C:23 , DG C:33 , K C:69 , DG D:34 , DG D:44 , DG E:45 , DG E:55 , K E:68 , DG F:56 , DG F:66
BINDING SITE FOR RESIDUE K C 67
02
AC2
SOFTWARE
K C:67 , DG E:45 , DG E:46 , DG E:54 , DG E:55 , K E:70 , DG F:56 , DG F:57 , DG F:65 , DG F:66
BINDING SITE FOR RESIDUE K E 68
03
AC3
SOFTWARE
DG C:23 , DG C:24 , DG C:32 , DG C:33 , K C:67 , K C:74 , DG D:34 , DG D:35 , DG D:43 , DG D:44
BINDING SITE FOR RESIDUE K C 69
04
AC4
SOFTWARE
DG E:46 , DG E:47 , DG E:53 , DG E:54 , K E:68 , K E:71 , DG F:57 , DG F:58 , DG F:64 , DG F:65
BINDING SITE FOR RESIDUE K E 70
05
AC5
SOFTWARE
DG E:47 , DG E:48 , DG E:52 , DG E:53 , K E:70 , DG F:58 , DG F:59 , DG F:63 , DG F:64
BINDING SITE FOR RESIDUE K E 71
06
AC6
SOFTWARE
DG A:1 , DG A:2 , DG A:10 , DG A:11 , DG B:14 , DG B:15 , DG B:19 , DG B:20
BINDING SITE FOR RESIDUE K A 72
07
AC7
SOFTWARE
DG A:3 , DG A:4 , DG A:8 , DG A:9 , K A:75 , DG B:12 , DG B:13 , DG B:21 , DG B:22
BINDING SITE FOR RESIDUE K A 73
08
AC8
SOFTWARE
DG C:24 , DG C:25 , DG C:31 , DG C:32 , K C:69 , K C:76 , DG D:35 , DG D:36 , DG D:42 , DG D:43
BINDING SITE FOR RESIDUE K C 74
09
AC9
SOFTWARE
DG A:2 , DG A:3 , DG A:9 , DG A:10 , K A:73 , DG B:13 , DG B:14 , DG B:20 , DG B:21
BINDING SITE FOR RESIDUE K A 75
10
BC1
SOFTWARE
DG C:25 , DG C:26 , DG C:30 , DG C:31 , K C:74 , DG D:36 , DG D:37 , DG D:41 , DG D:42
BINDING SITE FOR RESIDUE K C 76
11
BC2
SOFTWARE
DG C:23 , DG C:32
BINDING SITE FOR RESIDUE K C 77
12
BC3
SOFTWARE
BRU F:60
BINDING SITE FOR RESIDUE K F 78
13
BC4
SOFTWARE
DG A:8 , HOH A:224 , DG B:21
BINDING SITE FOR RESIDUE K A 79
14
BC5
SOFTWARE
HOH E:128 , HOH E:195
BINDING SITE FOR RESIDUE K E 80
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (41 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
Biol.Unit 2 (12 KB)
Header - Biol.Unit 2
Biol.Unit 3 (13 KB)
Header - Biol.Unit 3
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