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2ATJ
Biol. Unit 2
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Asym.Unit (112 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
RECOMBINANT HORSERADISH PEROXIDASE COMPLEX WITH BENZHYDROXAMIC ACID
Authors
:
A. Henriksen, D. J. Schuller, M. Gajhede
Date
:
19 Aug 97 (Deposition) - 28 Jan 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Peroxidase
(Keyword Search:
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Reference
:
A. Henriksen, D. J. Schuller, K. Meno, K. G. Welinder, A. T. Smith, M. Gajhede
Structural Interactions Between Horseradish Peroxidase C And The Substrate Benzhydroxamic Acid Determined By X-Ray Crystallography.
Biochemistry V. 37 8054 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BENZHYDROXAMIC ACID (BHOa)
1b: BENZHYDROXAMIC ACID (BHOb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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No.
Name
Count
Type
Full Name
1
BHO
1
Ligand/Ion
BENZHYDROXAMIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BEM (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
THR B:171 , ASP B:222 , THR B:225 , ILE B:228 , ASP B:230
BINDING SITE FOR RESIDUE CA B 351
2
AC4
SOFTWARE
ASP B:43 , VAL B:46 , GLY B:48 , ASP B:50 , SER B:52 , HOH B:721
BINDING SITE FOR RESIDUE CA B 352
3
AC7
SOFTWARE
ARG B:31 , ALA B:34 , SER B:35 , ARG B:38 , PHE B:41 , SER B:73 , PRO B:139 , ALA B:140 , PRO B:141 , LEU B:166 , GLY B:169 , HIS B:170 , PHE B:172 , GLY B:173 , LYS B:174 , ASN B:175 , GLN B:176 , PHE B:179 , PHE B:221 , SER B:246 , BHO B:353 , HOH B:768 , HOH B:803 , HOH B:999
BINDING SITE FOR RESIDUE HEM B 350
4
AC8
SOFTWARE
ARG B:38 , PHE B:41 , HIS B:42 , PHE B:68 , GLY B:69 , PRO B:139 , PHE B:179 , HEM B:350 , HOH B:999
BINDING SITE FOR RESIDUE BHO B 353
5
BEM
UNKNOWN
ARG B:38 , HIS B:42 , PHE B:68 , GLY B:69 , PRO B:139 , ALA B:140 , PRO B:141 , PHE B:179
BENZHYDROZAMIC ACID BINDING SITE.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (B:1-305)
2: PEROXIDASE_2 (B:33-44)
3: PEROXIDASE_1 (B:162-172)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1A_ARMRU
31-335
1
-
B:1-305
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1A_ARMRU
63-74
1
-
B:33-44
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1A_ARMRU
192-202
1
-
B:162-172
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2atja_ (A:)
1b: SCOP_d2atjb_ (B:)
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Horseradish (Armoracia rusticana) [TaxId: 3704]
(29)
1a
d2atja_
A:
1b
d2atjb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2atjA01 (A:2-138,A:285-305)
1b: CATH_2atjB01 (B:2-138,B:285-305)
2a: CATH_2atjA02 (A:139-284)
2b: CATH_2atjB02 (B:139-284)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
1a
2atjA01
A:2-138,A:285-305
1b
2atjB01
B:2-138,B:285-305
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
2a
2atjA02
A:139-284
2b
2atjB02
B:139-284
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (112 KB)
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